Pascal Auffinger

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2022
Publications (10 Years): 9

Top Topics

Molecular Dynamics Simulations

Structural Basis

Top Venues

RNA (New York, N.Y.)

Journal of chemical information and modeling

Angewandte Chemie (International ed. in English)

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Craig L Zirbel, Pascal Auffinger
Lone Pair…π Contacts and Structure Signatures of r(UNCG) Tetraloops, Z-Turns, and Z-Steps: A WebFR3D Survey. Molecules (Basel, Switzerland) 27 (14) (2022)
Klaudia Mrazikova, Holger Kruse, Vojtěch Mlýnský, Pascal Auffinger, Jiřı Šponer
Multiscale Modeling of Phosphate···π Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions. Journal of chemical information and modeling (2022)
Klaudia Mrazikova, Jiřı Šponer, Vojtěch Mlýnský, Pascal Auffinger, Holger Kruse
Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose···Nucleobase Lone-Pair···π Contacts in Nucleic Acids. Journal of chemical information and modeling 61 (11) (2021)
Pascal Auffinger, Eric Ennifar, Luigi D'Ascenzo
Deflating the RNA Mg2+ bubble. Stereochemistry to the rescue! RNA (New York, N.Y.) (2020)
Holger Kruse, Klaudia Mrazikova, Luigi D'Ascenzo, Jiřı Šponer, Pascal Auffinger
Short but Weak: The Z-DNA Lone-Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii. Angewandte Chemie (International ed. in English) 59 (38) (2020)
Holger Kruse, Jiřı Šponer, Pascal Auffinger
Comment on "Evaluating Unexpectedly Short Non-covalent Distances in X-ray Crystal Structures of Proteins with Electronic Structure Analysis". Journal of chemical information and modeling 59 (9) (2019)
Filip Leonarski, Luigi D'Ascenzo, Pascal Auffinger
Nucleobase carbonyl groups are poor Mg2+ inner-sphere binders but excellent monovalent ion binders-a critical PDB survey. RNA (New York, N.Y.) 25 (2) (2018)
Filip Leonarski, Luigi D'Ascenzo, Pascal Auffinger
Mg2+ ions: do they bind to nucleobase nitrogens? Nucleic acids research 45 (2) (2016)
Luigi D'Ascenzo, Filip Leonarski, Quentin Vicens, Pascal Auffinger
Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops. RNA (New York, N.Y.) 23 (3) (2016)