Vojtěch Mlýnský

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 30

Top Venues

Journal of chemical information and modeling

Journal of chemical theory and computation

The journal of physical chemistry letters

The journal of physical chemistry. B

Palacký University

Palacký University, Olomouc, Faculty of Science (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Palacký University

Czechia

Researcher :: Faculty of Science, Department of Physical Chemistry

Institute of Biophysics, Czech Academy of Sciences

Czechia

Postdoc :: Structure and Dynamics of Nucleic Acids

International School for Advanced Studies

Italy

Postdoc :: Molecular and Statistical Biophysics

Palacký University, Olomouc, Faculty of Science

Czechia

Researcher :: Department of Physical Chemistry

Education History

Palacký University, Olomouc, Faculty of Science

Czechia

PHD :: Department of Physical Chemistry

Publications

Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes". Journal of chemical information and modeling 64 (13) (2024)
Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling 64 (9) (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation 20 (15) (2024)
Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes". Journal of chemical information and modeling 64 (13) (2024)
Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling (2024)
Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes". Journal of chemical information and modeling (2024)
Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling 64 (9) (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation 20 (15) (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation (2024)
Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling 64 (9) (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation 20 (15) (2024)
Zhengyue Zhang, Jiřı Šponer, Giovanni Bussi, Vojtěch Mlýnský, Petr Sulc, Chad R Simmons, Nicholas Stephanopoulos, Miroslav Krepl
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of chemical information and modeling (2023)
Petr Stadlbauer, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer
Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations. Journal of chemical information and modeling (2023)
Zhengyue Zhang, Jiřı Šponer, Giovanni Bussi, Vojtěch Mlýnský, Petr Sulc, Chad R Simmons, Nicholas Stephanopoulos, Miroslav Krepl
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of chemical information and modeling 63 (9) (2023)
Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes. Journal of chemical information and modeling (2023)
Zhengyue Zhang, Jiřı Šponer, Giovanni Bussi, Vojtěch Mlýnský, Petr Sulc, Chad R Simmons, Nicholas Stephanopoulos, Miroslav Krepl
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of chemical information and modeling 63 (9) (2023)
Zhengyue Zhang, Jiřı Šponer, Giovanni Bussi, Vojtěch Mlýnský, Petr Sulc, Chad R Simmons, Nicholas Stephanopoulos, Miroslav Krepl
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of chemical information and modeling 63 (9) (2023)
Vojtěch Mlýnský, Petra Kührová, Petr Stadlbauer, Miroslav Krepl, Michal Otyepka, Pavel Banáš, Jiřı Šponer
Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations. Journal of chemical theory and computation (2023)
Zhengyue Zhang, Jiřı Šponer, Giovanni Bussi, Vojtěch Mlýnský, Petr Sulc, Chad R Simmons, Nicholas Stephanopoulos, Miroslav Krepl
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of chemical information and modeling 63 (9) (2023)
Klaudia Mrazikova, Holger Kruse, Vojtěch Mlýnský, Pascal Auffinger, Jiřı Šponer
Multiscale Modeling of Phosphate···π Contacts in RNA U-Turns Exposes Differences between Quantum-Chemical and AMBER Force Field Descriptions. Journal of chemical information and modeling (2022)
Thorben Fröhlking, Vojtěch Mlýnský, Michal Janeček, Petra Kührová, Miroslav Krepl, Pavel Banáš, Jiřı Šponer, Giovanni Bussi
Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field. Journal of chemical theory and computation 18 (7) (2022)
Vojtěch Mlýnský, Michal Janeček, Petra Kührová, Thorben Fröhlking, Michal Otyepka, Giovanni Bussi, Pavel Banáš, Jiřı Šponer
Toward Convergence in Folding Simulations of RNA Tetraloops: Comparison of Enhanced Sampling Techniques and Effects of Force Field Modifications. Journal of chemical theory and computation 18 (4) (2022)
Klaudia Mrazikova, Jiřı Šponer, Vojtěch Mlýnský, Pascal Auffinger, Holger Kruse
Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose···Nucleobase Lone-Pair···π Contacts in Nucleic Acids. Journal of chemical information and modeling 61 (11) (2021)
Michal Janeček, Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
W-RESP: Well-Restrained Electrostatic Potential-Derived Charges. Revisiting the Charge Derivation Model. Journal of chemical theory and computation 17 (6) (2021)
Klaudia Mráziková, Vojtěch Mlýnský, Petra Kührová, Pavlína Pokorná, Holger Kruse, Miroslav Krepl, Michal Otyepka, Pavel Banáš, Jiřı Šponer
UUCG RNA Tetraloop as a Formidable Force-Field Challenge for MD Simulations. Journal of chemical theory and computation 16 (12) (2020)
Vojtěch Mlýnský, Petra Kührová, Tomáš Kühr, Michal Otyepka, Giovanni Bussi, Pavel Banáš, Jiřı Šponer
Fine-Tuning of the AMBER RNA Force Field with a New Term Adjusting Interactions of Terminal Nucleotides. Journal of chemical theory and computation 16 (6) (2020)
Petra Kührová, Vojtěch Mlýnský, Marie Zgarbová, Miroslav Krepl, Giovanni Bussi, Robert B Best, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions". Journal of chemical theory and computation 16 (1) (2019)
Petra Kührová, Vojtěch Mlýnský, Marie Zgarbová, Miroslav Krepl, Giovanni Bussi, Robert B Best, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions. Journal of chemical theory and computation 15 (5) (2019)
Vojtěch Mlýnský, Giovanni Bussi
Molecular Dynamics Simulations Reveal an Interplay between SHAPE Reagent Binding and RNA Flexibility. The journal of physical chemistry letters 9 (2) (2018)
Vojtěch Mlýnský, Petra Kührová, Petr Jurečka, Jiří Šponer, Michal Otyepka, Pavel Banáš
Mapping the Chemical Space of the RNA Cleavage and Its Implications for Ribozyme Catalysis. The journal of physical chemistry. B 121 (48) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Vojtěch Mlýnský