Paul Babitzke

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 40

Top Topics

Gene Expression

Biofilm Formation

Bacillus Subtilis

Top Venues

Journal of bacteriology

Proceedings of the National Academy of Sciences of the United States of America

RNA (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) 30 (7) (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) 30 (7) (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology 206 (4) (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology 206 (4) (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) 30 (7) (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology 206 (4) (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology 206 (4) (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology 206 (4) (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology (2024)
Mark G Gorelik, Helen Yakhnin, Archana Pannuri, Alyssa C Walker, Christine Pourciau, Daniel M Czyz, Tony Romeo, Paul Babitzke
Multitier regulation of the E. coli extreme acid stress response by CsrA. Journal of bacteriology (2024)
Jessica Nava-Galeana, Helen Yakhnin, Paul Babitzke, Deyanira Pérez-Morales
CsrA Positively and Directly Regulates the Expression of the pdu , pocR , and eut Genes Required for the Luminal Replication of Salmonella Typhimurium. Microbiology spectrum (2023)
Jacob P Sieg, Elizabeth A Jolley, Melanie J Huot, Paul Babitzke, Philip C Bevilacqua
In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells. Nucleic acids research (2023)
Rishi Kishore Vishwakarma, M Zuhaib Qayyum, Paul Babitzke, Katsuhiko S Murakami
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Rishi Kishore Vishwakarma, M Zuhaib Qayyum, Paul Babitzke, Katsuhiko S Murakami
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Rishi Kishore Vishwakarma, M Zuhaib Qayyum, Paul Babitzke, Katsuhiko S Murakami
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Elizabeth A Jolley, Helen Yakhnin, David C Tack, Paul Babitzke, Philip C Bevilacqua
Transcriptome-wide probing reveals RNA thermometers that regulate translation of glycerol permease genes in Bacillus subtilis . RNA (New York, N.Y.) (2023)
Rishi Kishore Vishwakarma, M Zuhaib Qayyum, Paul Babitzke, Katsuhiko S Murakami
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Amelia R Silva-Rohwer, Kiara Held, Helen Yakhnin, Paul Babitzke, Viveka Vadyvaloo
CsrA-Mediated Translational Activation of the hmsE mRNA Enhances HmsD-Dependent C-di-GMP-Enabled Biofilm Production in Yersinia pestis. Journal of bacteriology (2023)
Rishi Kishore Vishwakarma, M Zuhaib Qayyum, Paul Babitzke, Katsuhiko S Murakami
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Rishi Kishore Vishwakarma, M Zuhaib Qayyum, Paul Babitzke, Katsuhiko S Murakami
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Alexander V Yakhnin, Mikhail Bubunenko, Zachary F Mandell, Lucyna Lubkowska, Sara Husher, Paul Babitzke, Mikhail Kashlev
Robust regulation of transcription pausing in Escherichia coli by the ubiquitous elongation factor NusG. Proceedings of the National Academy of Sciences of the United States of America 120 (24) (2023)
Rishi Kishore Vishwakarma, M Zuhaib Qayyum, Paul Babitzke, Katsuhiko S Murakami
Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 120 (7) (2023)
Christine Pourciau, Helen Yakhnin, Archanna Pannuri, Mark G Gorelik, Ying-Jung Lai, Tony Romeo, Paul Babitzke
CsrA coordinates the expression of ribosome hibernation and anti-σ factor proteins. mBio (2023)
Shivani Chhabra, Zachary F Mandell, Bo Liu, Paul Babitzke, David H Bechhofer
Analysis of mRNA Decay Intermediates in Bacillus subtilis 3' Exoribonuclease and RNA Helicase Mutant Strains. mBio 13 (2) (2022)
Oshadhi T Jayasinghe, Zachary F Mandell, Alexander V Yakhnin, Mikhail Kashlev, Paul Babitzke
Transcriptome-Wide Effects of NusA on RNA Polymerase Pausing in Bacillus subtilis. Journal of bacteriology 204 (5) (2022)
Zachary F Mandell, Dani Zemba, Paul Babitzke
Factor-stimulated intrinsic termination: getting by with a little help from some friends. Transcription 13 (4-5) (2022)
Zachary F Mandell, Rishi K Vishwakarma, Helen Yakhnin, Katsuhiko S Murakami, Mikhail Kashlev, Paul Babitzke
Comprehensive transcription terminator atlas for Bacillus subtilis. Nature microbiology 7 (11) (2022)
Zachary F Mandell, Reid T Oshiro, Alexander V Yakhnin, Rishi Vishwakarma, Mikhail Kashlev, Daniel B Kearns, Paul Babitzke
NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA. eLife 10 (2021)
Andrew Renda, Stephanie Poly, Ying-Jung Lai, Archana Pannuri, Helen Yakhnin, Anastasia H Potts, Philip C Bevilacqua, Tony Romeo, Paul Babitzke
CsrA-Mediated Translational Activation of ymdA Expression in Escherichia coli. mBio 11 (5) (2020)
Alexander V Yakhnin, Mikhail Kashlev, Paul Babitzke
NusG-dependent RNA polymerase pausing is a frequent function of this universally conserved transcription elongation factor. Critical reviews in biochemistry and molecular biology 55 (6) (2020)
Alexander V Yakhnin, Peter C FitzGerald, Carl McIntosh, Helen Yakhnin, Maria Kireeva, Joshua Turek-Herman, Zachary F Mandell, Mikhail Kashlev, Paul Babitzke
NusG controls transcription pausing and RNA polymerase translocation throughout the Bacillus subtilis genome. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
Helen Yakhnin, Alexander V Yakhnin, Brandon L Mouery, Zachary F Mandell, Catherine Karbasiafshar, Mikhail Kashlev, Paul Babitzke
NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis. mBio 10 (6) (2019)
Christine Pourciau, Archana Pannuri, Anastasia Potts, Helen Yakhnin, Paul Babitzke, Tony Romeo
Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli. mBio 10 (4) (2019)
Helen Yakhnin, Robert Aichele, Sarah E Ades, Tony Romeo, Paul Babitzke
Circuitry Linking the Global Csr- and σE-Dependent Cell Envelope Stress Response Systems. Journal of bacteriology 199 (23) (2017)
Smarajit Mondal, Alexander V Yakhnin, Paul Babitzke
Modular Organization of the NusA- and NusG-Stimulated RNA Polymerase Pause Signal That Participates in the Bacillus subtilis trp Operon Attenuation Mechanism. Journal of bacteriology 199 (14) (2017)
Hongmarn Park, Louise C McGibbon, Anastasia H Potts, Helen Yakhnin, Tony Romeo, Paul Babitzke
Translational Repression of the RpoS Antiadapter IraD by CsrA Is Mediated via Translational Coupling to a Short Upstream Open Reading Frame. mBio 8 (4) (2017)
Paul Babitzke, Michael O'Connor
Noncanonical Translation Initiation Comes of Age. Journal of bacteriology 199 (14) (2017)