Philip C Bevilacqua (Philip Bevilacqua)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 45

Top Topics

Multidrug Resistant

Bacillus Subtilis

Top Venues

RNA (New York, N.Y.)

ACS chemical biology

This page only lists publications with an associated author ORCID identifier.

Publications

Elizabeth A Jolley, Philip C Bevilacqua
Single-cell probing of RNA structure. Nature methods 21 (3) (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) 30 (7) (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) 30 (7) (2024)
Elizabeth A Jolley, Philip C Bevilacqua
Single-cell probing of RNA structure. Nature methods 21 (3) (2024)
Lauren N McKinley, McCauley O Meyer, Aswathy Sebastian, Benjamin K Chang, Kyle J Messina, Istvan Albert, Philip C Bevilacqua
Direct testing of natural twister ribozymes from over a thousand organisms reveals a broad tolerance for structural imperfections. bioRxiv : the preprint server for biology (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) 30 (7) (2024)
Elizabeth A Jolley, Philip C Bevilacqua
Single-cell probing of RNA structure. Nature methods (2024)
Elizabeth A Jolley, Philip C Bevilacqua
Single-cell probing of RNA structure. Nature methods (2024)
Catherine A Douds, Paul Babitzke, Philip C Bevilacqua
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS. RNA (New York, N.Y.) (2024)
Jacob P Sieg, Elizabeth A Jolley, Melanie J Huot, Paul Babitzke, Philip C Bevilacqua
In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells. Nucleic acids research (2023)
Allison M Williams, Elizabeth A Jolley, Michel Geovanni Santiago-Martínez, Cheong Xin Chan, Robin Gutell, James G Ferry, Philip C Bevilacqua
In vivo structure probing of RNA in Archaea: Novel insights into the ribosome structure of Methanosarcina acetivorans . RNA (New York, N.Y.) (2023)
Lauren N McKinley, Reuben G Kern, Sarah M Assmann, Philip C Bevilacqua
Flanking Sequence Cotranscriptionally Regulates Twister Ribozyme Activity. Biochemistry 63 (1) (2023)
Elizabeth A Jolley, Helen Yakhnin, David C Tack, Paul Babitzke, Philip C Bevilacqua
Transcriptome-wide probing reveals RNA thermometers that regulate translation of glycerol permease genes in Bacillus subtilis . RNA (New York, N.Y.) (2023)
McCauley O Meyer, Ryota Yamagami, Saehyun Choi, Christine D Keating, Philip C Bevilacqua
RNA folding studies inside peptide-rich droplets reveal roles of modified nucleosides at the origin of life. Science advances 9 (38) (2023)
Sarah M Assmann, Hong-Li Chou, Philip C Bevilacqua
Rock, scissors, paper: How RNA structure informs function. The Plant cell (2023)
Lauren N McKinley, Reuben G Kern, Sarah M Assmann, Philip C Bevilacqua
Flanking Sequence Cotranscriptionally Regulates Twister Ribozyme Activity. Biochemistry 63 (1) (2023)
Lauren N McKinley, Reuben G Kern, Sarah M Assmann, Philip C Bevilacqua
Flanking Sequence Cotranscriptionally Regulates Twister Ribozyme Activity. Biochemistry (2023)
Peter C Forstmeier, McCauley O Meyer, Philip C Bevilacqua
The Functional RNA Identification (FRID) Pipeline: Identification of Potential Pseudoknot-Containing RNA Elements as Therapeutic Targets for SARS-CoV-2. bioRxiv : the preprint server for biology (2023)
Saehyun Choi, McCauley O Meyer, Philip C Bevilacqua, Christine D Keating
Phase-specific RNA accumulation and duplex thermodynamics in multiphase coacervate models for membraneless organelles. Nature chemistry 14 (10) (2022)
Ryota Yamagami, Jacob P Sieg, Sarah M Assmann, Philip C Bevilacqua
Genome-wide analysis of the in vivo tRNA structurome reveals RNA structural and modification dynamics under heat stress. Proceedings of the National Academy of Sciences of the United States of America 119 (25) (2022)
Allison M Williams, Taylor M Dickson, Claudia A Lagoa-Miguel, Philip C Bevilacqua
Biological solution conditions and flanking sequence modulate LLPS of RNA G-quadruplex structures. RNA (New York, N.Y.) 28 (9) (2022)
Jacob P Sieg, Lauren N McKinley, Melanie J Huot, Neela H Yennawar, Philip C Bevilacqua
The Metabolome Weakens RNA Thermodynamic Stability and Strengthens RNA Chemical Stability. Biochemistry 61 (22) (2022)
Raghav R Poudyal, Jacob P Sieg, Bede Portz, Christine D Keating, Philip C Bevilacqua
RNA sequence and structure control assembly and function of RNA condensates. RNA (New York, N.Y.) 27 (12) (2021)
Philip C Bevilacqua, Allison M Williams, Hong-Li Chou, Sarah M Assmann
RNA Multimerization as an Organizing Force for Liquid-Liquid Phase Separation. RNA (New York, N.Y.) (2021)
Ryota Yamagami, Jacob P Sieg, Philip C Bevilacqua
Functional Roles of Chelated Magnesium Ions in RNA Folding and Function. Biochemistry 60 (31) (2021)
Allison M Williams, Raghav R Poudyal, Philip C Bevilacqua
Long Tracts of Guanines Drive Aggregation of RNA G-Quadruplexes in the Presence of Spermine. Biochemistry 60 (36) (2021)
Andrew J Veenis, Pengfei Li, Alexander V Soudackov, Sharon Hammes-Schiffer, Philip C Bevilacqua
Investigation of the pKa of the Nucleophilic O2' of the Hairpin Ribozyme. The journal of physical chemistry. B 125 (43) (2021)
David C Tack, Zhao Su, Yunqing Yu, Philip C Bevilacqua, Sarah M Assmann
Tissue-specific changes in the RNA structurome mediate salinity response in Arabidopsis. RNA (New York, N.Y.) 26 (4) (2020)
Fatma Pir Cakmak, Saehyun Choi, McCauley O Meyer, Philip C Bevilacqua, Christine D Keating
Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments. Nature communications 11 (1) (2020)
Kyle J Messina, Philip C Bevilacqua
Correction to "Cellular Small Molecules Contribute to Twister Ribozyme Catalysis". Journal of the American Chemical Society 141 (24) (2019)
Ryota Yamagami, Ruochuan Huang, Philip C Bevilacqua
Cellular Concentrations of Nucleotide Diphosphate-Chelated Magnesium Ions Accelerate Catalysis by RNA and DNA Enzymes. Biochemistry 58 (38) (2019)
Kyle J Messina, Ryszard Kierzek, Matthew A Tracey, Philip C Bevilacqua
Small Molecule Rescue and Glycosidic Conformational Analysis of the Twister Ribozyme. Biochemistry 58 (48) (2019)
Philip C Bevilacqua, Michael E Harris, Joseph A Piccirilli, Colin S Gaines, Abir Ganguly, Ken Kostenbader, Şölen Ekesan, Darrin M York
An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes. ACS chemical biology 14 (6) (2019)
Raghav R Poudyal, Christine D Keating, Philip C Bevilacqua
Polyanion-Assisted Ribozyme Catalysis Inside Complex Coacervates. ACS chemical biology 14 (6) (2019)
Kathleen A Leamy, Ryota Yamagami, Neela H Yennawar, Philip C Bevilacqua
Single-nucleotide control of tRNA folding cooperativity under near-cellular conditions. Proceedings of the National Academy of Sciences of the United States of America 116 (46) (2019)
Kathleen A Leamy, Neela H Yennawar, Philip C Bevilacqua
Molecular Mechanism for Folding Cooperativity of Functional RNAs in Living Organisms. Biochemistry 57 (20) (2018)
Raghav R Poudyal, Fatma Pir Cakmak, Christine D Keating, Philip C Bevilacqua
Physical Principles and Extant Biology Reveal Roles for RNA-Containing Membraneless Compartments in Origins of Life Chemistry. Biochemistry 57 (17) (2018)
Kyle J Messina, Philip C Bevilacqua
Cellular Small Molecules Contribute to Twister Ribozyme Catalysis. Journal of the American Chemical Society 140 (33) (2018)
Philip C Bevilacqua, Sarah M Assmann
Technique Development for Probing RNA Structure In Vivo and Genome-Wide. Cold Spring Harbor perspectives in biology 10 (10) (2018)
Erica A Frankel, Philip C Bevilacqua
Complexity in pH-Dependent Ribozyme Kinetics: Dark pKa Shifts and Wavy Rate-pH Profiles. Biochemistry 57 (5) (2017)
Jamie L Bingaman, Inanllely Y Gonzalez, Bo Wang, Philip C Bevilacqua
Activation of the glmS Ribozyme Nucleophile via Overdetermined Hydrogen Bonding. Biochemistry 56 (33) (2017)
Erica A Frankel, Christopher A Strulson, Christine D Keating, Philip C Bevilacqua
Cooperative Interactions in the Hammerhead Ribozyme Drive pKa Shifting of G12 and Its Stacked Base C17. Biochemistry 56 (20) (2017)
Kathleen A Leamy, Neela H Yennawar, Philip C Bevilacqua
Cooperative RNA Folding under Cellular Conditions Arises From Both Tertiary Structure Stabilization and Secondary Structure Destabilization. Biochemistry 56 (27) (2017)
David Mitchell, Laura E Ritchey, Hongmarn Park, Paul Babitzke, Sarah M Assmann, Philip C Bevilacqua
Glyoxals as in vivo RNA structural probes of guanine base-pairing. RNA (New York, N.Y.) 24 (1) (2017)