Pavel Skums

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 13

Top Topics

Dna Methylation

Respiratory Syndrome Coronavirus

Top Venues

Nature communications

medRxiv : the preprint server for health sciences

PLoS neglected tropical diseases

This page only lists publications with an associated author ORCID identifier.

Publications

Fatemeh Mohebbi, Alex Zelikovsky, Serghei Mangul, Gerardo Chowell, Pavel Skums
Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks. Nature communications 15 (1) (2024)
Fatemeh Mohebbi, Alex Zelikovsky, Serghei Mangul, Gerardo Chowell, Pavel Skums
Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks. Nature communications 15 (1) (2024)
Fatemeh Mohebbi, Alex Zelikovsky, Serghei Mangul, Gerardo Chowell, Pavel Skums
Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks. Nature communications 15 (1) (2024)
Amna Tariq, Tsira Chakhaia, Sushma Dahal, Alexander Ewing, Xinyi Hua, Sylvia K Ofori, Olaseni Prince, Argita D Salindri, Ayotomiwa Ezekiel Adeniyi, Juan M Banda, Pavel Skums, Ruiyan Luo, Leidy Y Lara-Díaz, Raimund Bürger, Isaac Chun-Hai Fung, Eunha Shim, Alexander Kirpich, Anuj Srivastava, Gerardo Chowell
An investigation of spatial-temporal patterns and predictions of the coronavirus 2019 pandemic in Colombia, 2020-2021. PLoS neglected tropical diseases 16 (3) (2022)
Sergey Knyazev, Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan, Dhrithi Deshpande, Pelin Icer Baykal, Zoia Comarova, Angela Lu, Yuri B Porozov, Tetyana I Vasylyeva, Joel O Wertheim, Braden T Tierney, Charles Y Chiu, Ren Sun, Aiping Wu, Malak S Abedalthagafi, Victoria M Pak, Shivashankar H Nagaraj, Adam L Smith, Pavel Skums, Bogdan Pasaniuc, Andrey Komissarov, Christopher E Mason, Eric Bortz, Philippe Lemey, Fyodor Kondrashov, Niko Beerenwinkel, Tommy Tsan-Yuk Lam, Nicholas C Wu, Alex Zelikovsky, Rob Knight, Keith A Crandall, Serghei Mangul
Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nature methods 19 (4) (2022)
Kavita Vats, Oleg Kruglov, Bikram Sahoo, Vishal Soman, Jiying Zhang, Galina V Shurin, Uma R Chandran, Pavel Skums, Michael R Shurin, Alexander Zelikovsky, Walter J Storkus, Yuri L Bunimovich
Sensory Nerves Impede the Formation of Tertiary Lymphoid Structures and Development of Protective Antimelanoma Immune Responses. Cancer immunology research 10 (9) (2022)
Alina Nemira, Ayotomiwa Ezekiel Adeniyi, Elena L Gasich, Kirill Y Bulda, Leonid N Valentovich, Anatoly G Krasko, Olga Glebova, Alexander Kirpich, Pavel Skums
SARS-CoV-2 transmission dynamics in Belarus in 2020 revealed by genomic and incidence data analysis. Communications medicine 1 (2021)
Amna Tariq, Juan M Banda, Pavel Skums, Sushma Dahal, Carlos Castillo-Garsow, Baltazar Espinoza, Noel G Brizuela, Roberto A Saenz, Alexander Kirpich, Ruiyan Luo, Anuj Srivastava, Humberto Gutiérrez-Pulido, Nestor Garcia Chan, Ana I Bento, Maria-Eugenia Jimenez-Corona, Gerardo Chowell
Transmission dynamics and forecasts of the COVID-19 pandemic in Mexico, March-December 2020. PloS one 16 (7) (2021)
Alexander Kirpich, Vladimir Koniukhovskii, Vladimir Shvartc, Pavel Skums, Thomas A Weppelmann, Evgeny Imyanitov, Semyon Semyonov, Konstantin Barsukov, Yuriy Gankin
Development of an interactive, agent-based local stochastic model of COVID-19 transmission and evaluation of mitigation strategies illustrated for the state of Massachusetts, USA. PloS one 16 (2) (2021)
Alina Nemira, Ayotomiwa Ezekiel Adeniyi, Elena L Gasich, Kirill Y Bulda, Leonid N Valentovich, Anatoly G Krasko, Olga Glebova, Alexander Kirpich, Pavel Skums
SARS-CoV-2 transmission dynamics in Belarus revealed by genomic and incidence data analysis. medRxiv : the preprint server for health sciences (2021)
Sergey Knyazev, Viachaslau Tsyvina, Anupama Shankar, Andrew Melnyk, Alexander Artyomenko, Tatiana Malygina, Yuri B Porozov, Ellsworth M Campbell, William M Switzer, Pavel Skums, Serghei Mangul, Alexander Zelikovsky
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Nucleic acids research 49 (17) (2021)
Pavel Skums, Alexander Kirpich, Pelin Icer Baykal, Alex Zelikovsky, Gerardo Chowell
Global transmission network of SARS-CoV-2: from outbreak to pandemic. medRxiv : the preprint server for health sciences (2020)
Viachaslau Tsyvina, Alexander Zelikovsky, Sagi Snir, Pavel Skums
Inference of mutability landscapes of tumors from single cell sequencing data. PLoS computational biology 16 (11) (2020)