Piotr Cieplak

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 25

Top Topics

Molecular Dynamics Simulations

Amyotrophic Lateral Sclerosis

Acute Heart Failure

Top Venues

Journal of chemical theory and computation

The Journal of chemical physics

Proceedings of the National Academy of Sciences of the United States of America

Apoptosis : an international journal on programmed cell death

This page only lists publications with an associated author ORCID identifier.

Publications

Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation (2024)
Yong Duan, Taoyu Niu, Junmei Wang, Piotr Cieplak, Ray Luo
PCMRESP: A Method for Polarizable Force Field Parameter Development and Transferability of the Polarizable Gaussian Multipole Models Across Multiple Solvents. Journal of chemical theory and computation (2024)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 20 (5) (2024)
Yong Duan, Taoyu Niu, Junmei Wang, Piotr Cieplak, Ray Luo
PCMRESP: A Method for Polarizable Force Field Parameter Development and Transferability of the Polarizable Gaussian Multipole Models Across Multiple Solvents. Journal of chemical theory and computation 20 (7) (2024)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 20 (5) (2024)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 20 (5) (2024)
Yong Duan, Taoyu Niu, Junmei Wang, Piotr Cieplak, Ray Luo
PCMRESP: A Method for Polarizable Force Field Parameter Development and Transferability of the Polarizable Gaussian Multipole Models Across Multiple Solvents. Journal of chemical theory and computation 20 (7) (2024)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 20 (5) (2024)
Yong Duan, Taoyu Niu, Junmei Wang, Piotr Cieplak, Ray Luo
PCMRESP: A Method for Polarizable Force Field Parameter Development and Transferability of the Polarizable Gaussian Multipole Models Across Multiple Solvents. Journal of chemical theory and computation 20 (7) (2024)
Yong Duan, Taoyu Niu, Junmei Wang, Piotr Cieplak, Ray Luo
PCMRESP: A Method for Polarizable Force Field Parameter Development and Transferability of the Polarizable Gaussian Multipole Models Across Multiple Solvents. Journal of chemical theory and computation 20 (7) (2024)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 20 (5) (2024)
Qiang Zhu, Yongxian Wu, Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Streamlining and Optimizing Strategies of Electrostatic Parameterization. Journal of chemical theory and computation (2023)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Transferability of the Electrostatic Parameters of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 19 (3) (2023)
Zhen Huang, Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo, Haixin Wei
Optimal Scheme to Achieve Energy Conservation in Induced Dipole Models. Journal of chemical theory and computation (2023)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Transferability of the Electrostatic Parameters of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation (2023)
Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo
Transferability of the Electrostatic Parameters of the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 19 (3) (2023)
Tomasz Frączyk, Piotr Cieplak
Neglected N-Truncated Amyloid-β Peptide and Its Mixed Cu-Zn Complexes. The protein journal 41 (3) (2022)
Shiji Zhao, Haixin Wei, Piotr Cieplak, Yong Duan, Ray Luo
Accurate Reproduction of Quantum Mechanical Many-Body Interactions in Peptide Main-Chain Hydrogen-Bonding Oligomers by the Polarizable Gaussian Multipole Model. Journal of chemical theory and computation 18 (10) (2022)
Shiji Zhao, Haixin Wei, Piotr Cieplak, Yong Duan, Ray Luo
PyRESP : A Program for Electrostatic Parameterizations of Additive and Induced Dipole Polarizable Force Fields. Journal of chemical theory and computation 18 (6) (2022)
Elaine Pirie, Chang-Ki Oh, Xu Zhang, Xuemei Han, Piotr Cieplak, Henry R Scott, Amanda K Deal, Swagata Ghatak, Fernando J Martinez, Gene W Yeo, John Yates Iii, Tomohiro Nakamura, Stuart A Lipton
S-nitrosylated TDP-43 triggers aggregation, cell-to-cell spread, and neurotoxicity in hiPSCs and in vivo models of ALS/FTD. Proceedings of the National Academy of Sciences of the United States of America 118 (11) (2021)
Pengzhi Zhang, Jaebeom Han, Piotr Cieplak, Margaret S Cheung
Determining the atomic charge of calcium ion requires the information of its coordination geometry in an EF-hand motif. The Journal of chemical physics 154 (12) (2021)
Haixin Wei, Ruxi Qi, Junmei Wang, Piotr Cieplak, Yong Duan, Ray Luo
Efficient formulation of polarizable Gaussian multipole electrostatics for biomolecular simulations. The Journal of chemical physics 153 (11) (2021)
Boris I Ratnikov, Piotr Cieplak, Albert G Remacle, Elise Nguyen, Jeffrey W Smith
Quantitative profiling of protease specificity. PLoS computational biology 17 (2) (2021)
Sonu Kumar, Piotr Cieplak
Effect of phosphorylation and single nucleotide polymorphisms on caspase substrates processing. Apoptosis : an international journal on programmed cell death 23 (3-4) (2019)
Sonu Kumar, Piotr Cieplak
Role of N-glycosylation in activation of proMMP-9. A molecular dynamics simulations study. PloS one 13 (1) (2018)