Gene W Yeo (Gene Yeo)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 106

Top Venues

Nature communications

RNA (New York, N.Y.)

Nature neuroscience

Genome biology

This page only lists publications with an associated author ORCID identifier.

Publications

Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature communications 15 (1) (2024)
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature communications 15 (1) (2024)
Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, null null, Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene W Yeo, Rob Knight, Joel O Wertheim, Francesca J Torriani
Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 78 (5) (2024)
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, Gene W Yeo
LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function. RNA (New York, N.Y.) 30 (3) (2024)
Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, null null, Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene W Yeo, Rob Knight, Joel O Wertheim, Francesca J Torriani
Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2024)
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee, Kevin D Corbett, Gene W Yeo
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues. Nature communications 15 (1) (2024)
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, Gene W Yeo
LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function. RNA (New York, N.Y.) 30 (3) (2024)
Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, null null, Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene W Yeo, Rob Knight, Joel O Wertheim, Francesca J Torriani
Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2024)
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature communications 15 (1) (2024)
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, Gene W Yeo
LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function. RNA (New York, N.Y.) 30 (3) (2024)
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature communications 15 (1) (2024)
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature communications 15 (1) (2024)
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee, Kevin D Corbett, Gene W Yeo
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues. Nature communications 15 (1) (2024)
Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Author Correction: Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee, Kevin D Corbett, Gene W Yeo
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues. Nature communications 15 (1) (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, null null, Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene W Yeo, Rob Knight, Joel O Wertheim, Francesca J Torriani
Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 78 (5) (2024)
Aaron A Smargon, Deepak Pant, Sofia Glynne, Trent A Gomberg, Gene W Yeo
Small nuclear RNAs enhance protein-free RNA-programmable base conversion on mammalian coding transcripts. bioRxiv : the preprint server for biology (2024)
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature communications 15 (1) (2024)
Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Author Correction: Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Joy S Xiang, Danielle M Schafer, Katherine L Rothamel, Gene W Yeo
Decoding protein-RNA interactions using CLIP-based methodologies. Nature reviews. Genetics (2024)
Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, Gene W Yeo
LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function. RNA (New York, N.Y.) 30 (3) (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, Gene W Yeo
LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function. RNA (New York, N.Y.) 30 (3) (2024)
Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, null null, Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene W Yeo, Rob Knight, Joel O Wertheim, Francesca J Torriani
Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, Gene W Yeo
LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function. RNA (New York, N.Y.) 30 (3) (2024)
Pratibha Jagannatha, Alexandra T Tankka, Daniel A Lorenz, Tao Yu, Brian A Yee, Kristopher W Brannan, Catherine Jiarui Zhou, Jason G Underwood, Gene W Yeo
Long-read Ribo-STAMP simultaneously measures transcription and translation with isoform resolution. Genome research (2024)
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies. Nature communications 15 (1) (2024)
Clarence K Mah, Noorsher Ahmed, Nicole A Lopez, Dylan C Lam, Avery Pong, Alexander Monell, Colin Kern, Yuanyuan Han, Gino Prasad, Anthony J Cesnik, Emma Lundberg, Quan Zhu, Hannah Carter, Gene W Yeo
Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome biology 25 (1) (2024)
Jonathan C Schmok, Manya Jain, Lena Annika Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her, Sara Elmsaouri, Maya L Gosztyla, Evan A Boyle, Pratibha Jagannatha, En-Ching Luo, Ester J Kwon, Marko Jovanovic, Gene W Yeo
Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion. Nature biotechnology (2024)
Lena Annika Street, Katherine Rothamel, Kristopher Brannan, Wenhao Jin, Benjamin Bokor, Kevin Dong, Kevin Rhine, Assael Madrigal, Norah Al-Azzam, Jenny Kim Kim, Yanzhe Ma, Ahmed Abdou, Erica Wolin, Ella Doron-Mandel, Joshua Ahdout, Mayuresh Mujumdar, Marko Jovanovic, Gene W Yeo
Large-scale map of RNA binding protein interactomes across the mRNA life-cycle. bioRxiv : the preprint server for biology (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Kathryn H Morelli, Aaron A Smargon, Gene W Yeo
Programmable macromolecule-based RNA-targeting therapies to treat human neurological disorders. RNA (New York, N.Y.) 29 (4) (2023)
Evan August Boyle, Gabriela Goldberg, Jonathan C Schmok, Jillybeth Burgado, Fabiana Izidro Layng, Hannah A Grunwald, Kylie M Balotin, Michael S Cuoco, Keng-Chi Chang, Gertrude Ecklu-Mensah, Aleena K S Arakaki, Noorsher Ahmed, Ximena Garcia Arceo, Pratibha Jagannatha, Jonathan E Pekar, Mallika Iyer, null null, Gene W Yeo
Junior scientists spotlight social bonds in seminars for diversity, equity, and inclusion in STEM. PloS one 18 (11) (2023)
Ana Vujovic, Laura P M H de Rooij, Ava Keyvani Chahi, He Tian Tony Chen, Brian A Yee, Sampath Kumar Loganathan, Lina Liu, Derek C H Chan, Amanda Tajik, Emily Tsao, Steven Moreira, Pratik Joshi, Joshua Xu, Nicholas Wong, Zaldy Balde, Soheil Jahangiri, Sasan Zandi, Stefan Aigner, John E Dick, Mark D Minden, Daniel Schramek, Gene W Yeo, Kristin J Hope
In vivo screening unveils pervasive RNA-binding protein dependencies in leukemic stem cells and identifies ELAVL1 as a therapeutic target. Blood cancer discovery (2023)
Kathryn H Morelli, Aaron A Smargon, Gene W Yeo
Programmable macromolecule-based RNA-targeting therapies to treat human neurological disorders. RNA (New York, N.Y.) 29 (4) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, Gene W Yeo
LARP4 Is an RNA-Binding Protein That Binds Nuclear-Encoded Mitochondrial mRNAs To Promote Mitochondrial Function. RNA (New York, N.Y.) (2023)
Ze Liu, Justin Wang, Yi Shi, Brian A Yee, Markus Terrey, Qian Zhang, Jenq-Chang Lee, Kuo-I Lin, Andrew H-J Wang, Susan L Ackerman, Gene W Yeo, Haissi Cui, Xiang-Lei Yang
Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery. Nucleic acids research (2023)
Stefan G Kathman, Seong Joo Koo, Garrett L Lindsey, Hsuan-Lin Her, Steven M Blue, Haoxin Li, Steffen Jaensch, Jarrett R Remsberg, Kay Ahn, Gene W Yeo, Brahma Ghosh, Benjamin F Cravatt
Remodeling oncogenic transcriptomes by small molecules targeting NONO. Nature chemical biology (2023)
Ana Vujovic, Laura P M H de Rooij, Ava Keyvani Chahi, He Tian Tony Chen, Brian A Yee, Sampath Kumar Loganathan, Lina Liu, Derek C H Chan, Amanda Tajik, Emily Tsao, Steven Moreira, Pratik Joshi, Joshua Xu, Nicholas Wong, Zaldy Balde, Soheil Jahangiri, Sasan Zandi, Stefan Aigner, John E Dick, Mark D Minden, Daniel Schramek, Gene W Yeo, Kristin J Hope
In vivo screening unveils pervasive RNA-binding protein dependencies in leukemic stem cells and identifies ELAVL1 as a therapeutic target. Blood cancer discovery (2023)
Kathryn H Morelli, Aaron A Smargon, Gene W Yeo
Programmable Macromolecule-based RNA-targeting Therapies To Treat Human Neurological Disorders. RNA (New York, N.Y.) (2023)
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian A Yee, Chirayu Chokshi, Sansi Xing, Frederick Tan, Raymond G Fox, Ashley A Adile, David Bakhshinyan, Kevin R Brown, William D Gwynne, Minomi Subapanditha, Petar Miletic, Daniel Picard, Ian Burns, Jason Moffat, Kamil Paruch, Adam J Fleming, Kristin Hope, John P Provias, Marc Remke, Yu Lu, Tannishtha Reya, Chitra Venugopal, Jüri Reimand, Robert J Wechsler-Reya, Gene W Yeo, Sheila K Singh
Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature communications 14 (1) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Kathryn H Morelli, Aaron A Smargon, Gene W Yeo
Programmable macromolecule-based RNA-targeting therapies to treat human neurological disorders. RNA (New York, N.Y.) 29 (4) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Kathryn H Morelli, Aaron A Smargon, Gene W Yeo
Programmable macromolecule-based RNA-targeting therapies to treat human neurological disorders. RNA (New York, N.Y.) 29 (4) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Eric Kofman, Brian Yee, Hugo C Medina-Munoz, Gene W Yeo
FLARE: a fast and flexible workflow for identifying RNA editing foci. BMC bioinformatics 24 (1) (2023)
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian A Yee, Chirayu Chokshi, Sansi Xing, Frederick Tan, Raymond G Fox, Ashley A Adile, David Bakhshinyan, Kevin R Brown, William D Gwynne, Minomi Subapanditha, Petar Miletic, Daniel Picard, Ian Burns, Jason Moffat, Kamil Paruch, Adam J Fleming, Kristin Hope, John P Provias, Marc Remke, Yu Lu, Tannishtha Reya, Chitra Venugopal, Jüri Reimand, Robert J Wechsler-Reya, Gene W Yeo, Sheila K Singh
Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature communications 14 (1) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Steven M Blue, Brian A Yee, Gabriel A Pratt, Jasmine R Mueller, Samuel S Park, Alexander A Shishkin, Anne C Starner, Eric L Van Nostrand, Gene W Yeo
Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq. Nature protocols 17 (5) (2022)
Phuong Le, Noorsher Ahmed, Gene W Yeo
Illuminating RNA biology through imaging. Nature cell biology 24 (6) (2022)
Xin-Zi Emily Tang, Shu Xuan Tan, Shawn Hoon, Gene W Yeo
Pre-existing adaptive immunity to the RNA-editing enzyme Cas13d in humans. Nature medicine 28 (7) (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Allan C Nojadera, Stephanie C Bruns, Sergei A Manakov, Brian A Yee, Karen B Chapman, Gene W Yeo
Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP. Nature methods 20 (1) (2022)
Louis Philip Benoit Bouvrette, Xiaofeng Wang, Jonathan Boulais, Jian Kong, Easin Uddin Syed, Steven M Blue, Lijun Zhan, Sara Olson, Rebecca Stanton, Xintao Wei, Brian Yee, Eric L Van Nostrand, Xiang-Dong Fu, Christopher B Burge, Brenton R Graveley, Gene W Yeo, Eric Lécuyer
RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins. Nucleic acids research (2022)
Lina Liu, Ana Vujovic, Nandan P Deshpande, Shashank Sathe, Govardhan Anande, He Tian Tony Chen, Joshua Xu, Mark D Minden, Gene W Yeo, Ashwin Unnikrishnan, Kristin J Hope, Yu Lu
The splicing factor RBM17 drives leukemic stem cell maintenance by evading nonsense-mediated decay of pro-leukemic factors. Nature communications 13 (1) (2022)
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Allan C Nojadera, Stephanie C Bruns, Sergei A Manakov, Brian A Yee, Karen B Chapman, Gene W Yeo
Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP. Nature methods (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Hsuan-Lin Her, Evan Boyle, Gene W Yeo
Metadensity: a background-aware python pipeline for summarizing CLIP signals on various transcriptomic sites. Bioinformatics advances 2 (1) (2022)
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Allan C Nojadera, Stephanie C Bruns, Sergei A Manakov, Brian A Yee, Karen B Chapman, Gene W Yeo
Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP. Nature methods 20 (1) (2022)
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Allan C Nojadera, Stephanie C Bruns, Sergei A Manakov, Brian A Yee, Karen B Chapman, Gene W Yeo
Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP. Nature methods 20 (1) (2022)
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Allan C Nojadera, Stephanie C Bruns, Sergei A Manakov, Brian A Yee, Karen B Chapman, Gene W Yeo
Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP. Nature methods 20 (1) (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience (2022)
Aaron A Smargon, Assael A Madrigal, Brian A Yee, Kevin D Dong, Jasmine R Mueller, Gene W Yeo
Crosstalk between CRISPR-Cas9 and the human transcriptome. Nature communications 13 (1) (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Allan C Nojadera, Stephanie C Bruns, Sergei A Manakov, Brian A Yee, Karen B Chapman, Gene W Yeo
Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP. Nature methods 20 (1) (2022)
Jad N Kanbar, Shengyun Ma, Eleanor S Kim, Nadia S Kurd, Matthew S Tsai, Tiffani Tysl, Christella E Widjaja, Abigail E Limary, Brian A Yee, Zhaoren He, Yajing Hao, Xiang-Dong Fu, Gene W Yeo, Wendy Jia Men Huang, John T Chang
The long noncoding RNA Malat1 regulates CD8+ T cell differentiation by mediating epigenetic repression. The Journal of experimental medicine 219 (6) (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian A Yee, Chirayu Chokshi, Sansi Xing, Frederick Tan, Raymond G Fox, Ashley A Adile, David Bakhshinyan, Kevin R Brown, William D Gwynne, Minomi Subapanditha, Petar Miletic, Daniel Picard, Ian Burns, Jason Moffat, Kamil Paruch, Adam J Fleming, Kristin Hope, John P Provias, Marc Remke, Yu Lu, Tannishtha Reya, Chitra Venugopal, Jüri Reimand, Robert J Wechsler-Reya, Gene W Yeo, Sheila K Singh
Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature communications 13 (1) (2022)
Gene W Yeo, Joy Xiang, Jasmine Mueller, En-Ching Luo, Brian Yee, Danielle Schafer, Jonathan Schmok, Frederick Tan, Katherine Rothamel, Rachael N McVicar, Elizabeth Kwong, Ben Croker, Krysten Jones, Hsuan-Lin Her, Chun-Yuan Chen, Anthony Vu, Wenhao Jin, Samuel Park, Phuong Le, Kristopher Brennan, Eric Kofman, Yanhua Li, Alexandra Tankka, Kevin Dong, Yan Song, Alex E Clark, Aaron F Carlin, Eric Van Nostrand, Sandra Leibel
Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions. Research square (2022)
Kathryn H Morelli, Qian Wu, Maya L Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang, Jia-Xu Chen, Ryan J Marina, Kari Lee, Krysten L Jones, Megan Y Huang, Allison Li, Charlene Smith-Geater, Leslie M Thompson, Wenzhen Duan, Gene W Yeo
An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models. Nature neuroscience 26 (1) (2022)
Angela L Nicholson-Shaw, Eric R Kofman, Gene W Yeo, Amy E Pasquinelli
Nuclear and cytoplasmic poly(A) binding proteins (PABPs) favor distinct transcripts and isoforms. Nucleic acids research 50 (8) (2022)
Kathryn H Morelli, Wenhao Jin, Shashank Shathe, Assael A Madrigal, Krysten L Jones, Joshua L Schwartz, Tristan Bridges, Jasmine R Mueller, Archana Shankar, Isaac A Chaim, John W Day, Gene W Yeo
MECP2-related pathways are dysregulated in a cortical organoid model of myotonic dystrophy. Science translational medicine 14 (651) (2022)
Anna-Maria Herzner, Zia Khan, Eric L Van Nostrand, Sara Chan, Trinna L Cuellar, Ronald Chen, Ximo Pechuan, Laszlo Komuves, Margaret Solon, Zora Modrusan, Benjamin Haley, Gene W Yeo, Timothy W Behrens, Matthew L Albert
ADAR and hnRNPC deficiency synergize in activating endogenous dsRNA-induced type I IFN responses. The Journal of experimental medicine 218 (9) (2021)
Elaine Pirie, Chang-Ki Oh, Xu Zhang, Xuemei Han, Piotr Cieplak, Henry R Scott, Amanda K Deal, Swagata Ghatak, Fernando J Martinez, Gene W Yeo, John Yates Iii, Tomohiro Nakamura, Stuart A Lipton
S-nitrosylated TDP-43 triggers aggregation, cell-to-cell spread, and neurotoxicity in hiPSCs and in vivo models of ALS/FTD. Proceedings of the National Academy of Sciences of the United States of America 118 (11) (2021)
Cleber A Trujillo, Edward S Rice, Nathan K Schaefer, Isaac A Chaim, Emily C Wheeler, Assael A Madrigal, Justin Buchanan, Sebastian Preissl, Allen Wang, Priscilla D Negraes, Ryan A Szeto, Roberto Hirochi Herai, Alik Huseynov, Mariana S A Ferraz, Fernando da Silva Borges, Alexandre Hiroaki Kihara, Ashley Byrne, Maximillian G Marin, Christopher Vollmers, Angela N Brooks, Jonathan D Lautz, Katerina Semendeferi, Joshua D Kapp, Gene W Yeo, Stephen E P Smith, Richard E Green, Alysson Renato Muotri
Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment. Science (New York, N.Y.) 371 (6530) (2021)
Yue Qin, Edward L Huttlin, Casper F Winsnes, Maya L Gosztyla, Ludivine Wacheul, Marcus R Kelly, Steven M Blue, Fan Zheng, Michael Chen, Leah V Schaffer, Katherine Licon, Anna Bäckström, Laura Pontano Vaites, John J Lee, Wei Ouyang, Sophie N Liu, Tian Zhang, Erica Silva, Jisoo Park, Adriana Pitea, Jason F Kreisberg, Steven P Gygi, Jianzhu Ma, J Wade Harper, Gene W Yeo, Denis L J Lafontaine, Emma Lundberg, Trey Ideker
A multi-scale map of cell structure fusing protein images and interactions. Nature (2021)
Kristopher W Brannan, Isaac A Chaim, Ryan J Marina, Brian A Yee, Eric R Kofman, Daniel A Lorenz, Pratibha Jagannatha, Kevin D Dong, Assael A Madrigal, Jason G Underwood, Gene W Yeo
Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes. Nature methods 18 (5) (2021)
Ranjan Batra, David A Nelles, Daniela M Roth, Florian Krach, Curtis A Nutter, Takahiro Tadokoro, James D Thomas, Łukasz J Sznajder, Steven M Blue, Haydee L Gutierrez, Patrick Liu, Stefan Aigner, Oleksandr Platoshyn, Atsushi Miyanohara, Martin Marsala, Maurice S Swanson, Gene W Yeo
The sustained expression of Cas9 targeting toxic RNAs reverses disease phenotypes in mouse models of myotonic dystrophy type 1. Nature biomedical engineering 5 (2) (2020)
Aaron A Smargon, Yilan J Shi, Gene W Yeo
RNA-targeting CRISPR systems from metagenomic discovery to transcriptomic engineering. Nature cell biology 22 (2) (2020)

Gene W Yeo.css-eqlu8i{font-size:small;padding-left:4px;} (Gene Yeo)

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Gene W Yeo (Gene Yeo)