Pradipta Bandyopadhyay

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 7

Top Topics

Protein Protein

Molecular Dynamics

Top Venues

Physical chemistry chemical physics : PCCP

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Abdul Basit, Devapriya Choudhury, Pradipta Bandyopadhyay
Prediction of Ca 2+ Binding Site in Proteins With a Fast and Accurate Method Based on Statistical Mechanics and Analysis of Crystal Structures. Proteins (2024)
Umesh C Roy, Pradipta Bandyopadhyay
Correlation between protein conformations and water structure and thermodynamics at high pressure: A molecular dynamics study of the Bovine Pancreatic Trypsin Inhibitor (BPTI) protein. The Journal of chemical physics 158 (9) (2023)
Ajeet Kumar Yadav, Pradipta Bandyopadhyay, Evangelos A Coutsias, Ken A Dill
Crustwater: Modeling Hydrophobic Solvation. The journal of physical chemistry. B 126 (32) (2022)
Abdul Basit, Ajeet Kumar Yadav, Pradipta Bandyopadhyay
Calcium Ion Binding to the Mutants of Calmodulin: A Structure-Based Computational Predictive Model of Binding Affinity Using a Charge Scaling Approach in Molecular Dynamics Simulation. Journal of chemical information and modeling 62 (11) (2022)
Prerna Priya, Abdul Basit, Pradipta Bandyopadhyay
A strategy to optimize the peptide-based inhibitors against different mutants of the spike protein of SARS-CoV-2. Journal of biomolecular structure & dynamics (2022)
Rakesh Srivastava, Mausumi Chattopadhyaya, Pradipta Bandyopadhyay
Calculation of salt-dependent free energy of binding of β-lactoglobulin homodimer formation and mechanism of dimer formation using molecular dynamics simulation and three-dimensional reference interaction site model (3D-RISM): diffuse salt ions and non-polar interactions between the monomers favor the dimer formation. Physical chemistry chemical physics : PCCP 22 (4) (2020)
Atul Kumar Jaiswal, Rakesh Srivastava, Preeti Pandey, Pradipta Bandyopadhyay
Microscopic picture of water-ethylene glycol interaction near a model DNA by computer simulation: Concentration dependence, structure, and localized thermodynamics. PloS one 13 (11) (2018)