Ken A Dill (Ken Dill)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 52

Top Venues

Journal of chemical theory and computation

Proceedings of the National Academy of Sciences of the United States of America

Journal of chemical information and modeling

International journal of molecular sciences

Stony Brook University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stony Brook University Oct 01 2010

United States

Director :: Laufer Center for Physical and Quantitative Biology

Publications

Gregory L Dignon, Ken A Dill
Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities. Journal of chemical theory and computation (2024)
Gregory L Dignon, Ken A Dill
Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities. Journal of chemical theory and computation 20 (3) (2024)
Tyler Matsuzaki, Corey Weistuch, Adam de Graff, Ken A Dill, Gábor Balázsi
Transcriptional drift in aging cells: A global decontroller. Proceedings of the National Academy of Sciences of the United States of America 121 (30) (2024)
Tyler Matsuzaki, Corey Weistuch, Adam de Graff, Ken A Dill, Gábor Balázsi
Transcriptional drift in aging cells: A global decontroller. Proceedings of the National Academy of Sciences of the United States of America 121 (30) (2024)
Tyler Matsuzaki, Corey Weistuch, Adam de Graff, Ken A Dill, Gábor Balázsi
Transcriptional drift in aging cells: A global decontroller. Proceedings of the National Academy of Sciences of the United States of America 121 (30) (2024)
Gregory L Dignon, Ken A Dill
Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities. Journal of chemical theory and computation 20 (3) (2024)
Charles D Kocher, Ken A Dill
The prebiotic emergence of biological evolution. Royal Society open science 11 (7) (2024)
Charles D Kocher, Ken A Dill
Origins of Life: The Protein Folding Problem all over again? Proceedings of the National Academy of Sciences of the United States of America 121 (34) (2024)
Gregory L Dignon, Ken A Dill
Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities. Journal of chemical theory and computation 20 (3) (2024)
Charles D Kocher, Ken A Dill
Origins of Life: The Protein Folding Problem all over again? Proceedings of the National Academy of Sciences of the United States of America 121 (34) (2024)
Gregory L Dignon, Ken A Dill
Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities. Journal of chemical theory and computation (2024)
Gregory L Dignon, Ken A Dill
Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities. Journal of chemical theory and computation 20 (3) (2024)
Tyler Matsuzaki, Corey Weistuch, Adam de Graff, Ken A Dill, Gábor Balázsi
Transcriptional drift in aging cells: A global decontroller. Proceedings of the National Academy of Sciences of the United States of America 121 (30) (2024)
Charles D Kocher, Ken A Dill
Origins of Life: The Protein Folding Problem all over again? Proceedings of the National Academy of Sciences of the United States of America 121 (34) (2024)
Sridip Parui, James C Robertson, Sandeep Somani, Gary John Tresadern, Cong Liu, Ken A Dill
MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands. Journal of chemical information and modeling 63 (9) (2023)
Tomaz Urbic, Ken A Dill
Simple Model of Liquid Water Dynamics. The journal of physical chemistry. B (2023)
Vojko Vlachy, Yurij V Kalyuzhnyi, Barbara Hribar-Lee, Ken A Dill
Protein Association in Solution: Statistical Mechanical Modeling. Biomolecules 13 (12) (2023)
Rostam M Razban, Jonathan Asher Pachter, Ken A Dill, Lilianne Rivka Mujica-Parodi
Early path dominance as a principle for neurodevelopment. Proceedings of the National Academy of Sciences of the United States of America 120 (16) (2023)
Vojko Vlachy, Yurij V Kalyuzhnyi, Barbara Hribar-Lee, Ken A Dill
Protein Association in Solution: Statistical Mechanical Modeling. Biomolecules 13 (12) (2023)
Sridip Parui, Emiliano Brini, Ken A Dill
Computing Free Energies of Fold-Switching Proteins Using MELD x MD. Journal of chemical theory and computation (2023)
Vojko Vlachy, Yurij V Kalyuzhnyi, Barbara Hribar-Lee, Ken A Dill
Protein Association in Solution: Statistical Mechanical Modeling. Biomolecules 13 (12) (2023)
Sridip Parui, James C Robertson, Sandeep Somani, Gary John Tresadern, Cong Liu, Ken A Dill
MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands. Journal of chemical information and modeling (2023)
Charles D Kocher, Ken A Dill
Origins of life: first came evolutionary dynamics. QRB discovery 4 (2023)
Sridip Parui, James C Robertson, Sandeep Somani, Gary John Tresadern, Cong Liu, Ken A Dill
MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands. Journal of chemical information and modeling (2023)
Vojko Vlachy, Yurij V Kalyuzhnyi, Barbara Hribar-Lee, Ken A Dill
Protein Association in Solution: Statistical Mechanical Modeling. Biomolecules 13 (12) (2023)
Rostam M Razban, Botond B Antal, Ken A Dill, Lilianne Rivka Mujica-Parodi
Brain signaling becomes less integrated and more segregated with age. bioRxiv : the preprint server for biology (2023)
Sridip Parui, James C Robertson, Sandeep Somani, Gary John Tresadern, Cong Liu, Ken A Dill
MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands. Journal of chemical information and modeling 63 (9) (2023)
Ernest Glukhov, Dmytro Kalitin, Darya Stepanenko, Yimin Zhu, Thu Nguen, George Jones, Carlos L Simmerling, Julie C Mitchell, Sandor Vajda, Ken A Dill, Dzmitry Padhorny, Dima Kozakov
MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction. bioRxiv : the preprint server for biology (2023)
Sridip Parui, James C Robertson, Sandeep Somani, Gary John Tresadern, Cong Liu, Ken A Dill
MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands. Journal of chemical information and modeling (2023)
Ajeet Kumar Yadav, Pradipta Bandyopadhyay, Evangelos A Coutsias, Ken A Dill
Crustwater: Modeling Hydrophobic Solvation. The journal of physical chemistry. B 126 (32) (2022)
Mina Nikolić, Sandi Brudar, Evangelos Coutsias, Ken A Dill, Miha Lukšič, Carlos L Simmerling, Barbara Hribar-Lee
BioMThermDB 1.0: Thermophysical Database of Proteins in Solutions. International journal of molecular sciences 23 (23) (2022)
Thomas Farquharson, Luca Agozzino, Ken A Dill
The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids. Life (Basel, Switzerland) 12 (5) (2022)
Mina Nikolić, Sandi Brudar, Evangelos Coutsias, Ken A Dill, Miha Lukšič, Carlos L Simmerling, Barbara Hribar-Lee
BioMThermDB 1.0: Thermophysical Database of Proteins in Solutions. International journal of molecular sciences 23 (23) (2022)
Mina Nikolić, Sandi Brudar, Evangelos Coutsias, Ken A Dill, Miha Lukšič, Carlos L Simmerling, Barbara Hribar-Lee
BioMThermDB 1.0: Thermophysical Database of Proteins in Solutions. International journal of molecular sciences 23 (23) (2022)
Mina Nikolić, Sandi Brudar, Evangelos Coutsias, Ken A Dill, Miha Lukšič, Carlos L Simmerling, Barbara Hribar-Lee
BioMThermDB 1.0: Thermophysical Database of Proteins in Solutions. International journal of molecular sciences 23 (23) (2022)
Mina Nikolić, Sandi Brudar, Evangelos Coutsias, Ken A Dill, Miha Lukšič, Carlos L Simmerling, Barbara Hribar-Lee
BioMThermDB 1.0: Thermophysical Database of Proteins in Solutions. International journal of molecular sciences 23 (23) (2022)
Roy Nassar, Emiliano Brini, Sridip Parui, Cong Liu, Gregory L Dignon, Ken A Dill
Accelerating Protein Folding Molecular Dynamics Using Inter-Residue Distances from Machine Learning Servers. Journal of chemical theory and computation 18 (3) (2022)
Charles D Kocher, Luca Agozzino, Ken A Dill
Nanoscale Catalyst Chemotaxis Can Drive the Assembly of Functional Pathways. The journal of physical chemistry. B 125 (31) (2021)
Catherine L Lawson, Andriy Kryshtafovych, Paul D Adams, Pavel V Afonine, Matthew L Baker, Benjamin A Barad, Paul S Bond, Tom Burnley, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Ken A Dill, Frank DiMaio, Daniel P Farrell, Brian K Shoichet, Mark A Herzik, Soon Wen Hoh, Jie Hou, Li-Wei Hung, Maxim Igaev, Agnel-Praveen Joseph, Daisuke Kihara, Dilip Kumar, Sumit Mittal, Bohdan Monastyrskyy, Mateusz Olek, Colin M Palmer, Ardan Patwardhan, Alberto Perez, Jonas Pfab, Grigore D Pintilie, Jane S Richardson, Peter B Rosenthal, Daipayan Sarkar, Luisa U Schäfer, Michael F Schmid, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Genki Terashi, Thomas C Terwilliger, Andrea C Vaiana, Liguo Wang, Zhe Wang, Stephanie A Wankowicz, Christopher J Williams, Martyn David Winn, Tianqi Wu, Xiaodi Yu, Kaiming Zhang, Helen M Berman, Wah Chiu
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature methods 18 (2) (2021)
Ajeet Kumar Yadav, Pradipta Bandyopadhyay, Tomaz Urbic, Ken A Dill
Analytical 2-Dimensional Model of Nonpolar and Ionic Solvation in Water. The journal of physical chemistry. B 125 (7) (2021)
Cong Liu, Emiliano Brini, Ken A Dill
Accelerating Molecular Dynamics Enrichments of High-Affinity Ligands for Proteins. Journal of chemical theory and computation (2021)
Emiliano Brini, Carlos L Simmerling, Ken A Dill
Protein storytelling through physics. Science (New York, N.Y.) 370 (6520) (2021)
Corey Weistuch, Lilianne Rivka Mujica-Parodi, Rostam M Razban, Botond Antal, Helena van Nieuwenhuizen, Anar Amgalan, Ken A Dill
Metabolism modulates network synchrony in the aging brain. Proceedings of the National Academy of Sciences of the United States of America 118 (40) (2021)
Jason A Wagoner, Ken A Dill
Evolution of mechanical cooperativity among myosin II motors. Proceedings of the National Academy of Sciences of the United States of America 118 (20) (2021)
Bhanita Sharma, Ken A Dill
MELD-accelerated molecular dynamics help determine amyloid fibril structures. Communications biology 4 (1) (2021)
Adam Mr de Graff, David E Mosedale, Tilly Sharp, Ken A Dill, David J Grainger
Proteostasis is adaptive: Balancing chaperone holdases against foldases. PLoS computational biology 16 (12) (2020)
Cong Liu, Emiliano Brini, Alberto Perez, Ken A Dill
Computing Ligands Bound to Proteins Using MELD-Accelerated MD. Journal of chemical theory and computation 16 (10) (2020)
Emiliano Brini, Dima Kozakov, Ken A Dill
Predicting Protein Dimer Structures Using MELD × MD. Journal of chemical theory and computation 15 (5) (2019)
Tomaz Urbic, Ken A Dill
Water Is a Cagey Liquid. Journal of the American Chemical Society 140 (49) (2018)
Alberto Perez, Florian Sittel, Gerhard Stock, Ken A Dill
MELD-Path Efficiently Computes Conformational Transitions, Including Multiple and Diverse Paths. Journal of chemical theory and computation 14 (4) (2018)
James C Robertson, Alberto Perez, Ken A Dill
MELD × MD Folds Nonthreadables, Giving Native Structures and Populations. Journal of chemical theory and computation 14 (12) (2018)
Emiliano Brini, Christopher J Fennell, Marivi Fernandez-Serra, Barbara Hribar-Lee, Miha Lukšič, Ken A Dill
How Water's Properties Are Encoded in Its Molecular Structure and Energies. Chemical reviews 117 (19) (2017)

Ken A Dill.css-eqlu8i{font-size:small;padding-left:4px;} (Ken Dill)

Publication Activity (10 Years)

Top Topics

Top Venues

Ken A Dill (Ken Dill)