Robert W Shafer

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 32

Top Topics

Antimicrobial Resistance

Quality Control

Top Venues

Nature reviews. Drug discovery

AIDS research and human retroviruses

This page only lists publications with an associated author ORCID identifier.

Publications

Maëlle Duffey, Robert W Shafer, Juliano Timm, Jeremy N Burrows, Nader Fotouhi, Mark Cockett, Didier Leroy
Combating antimicrobial resistance in malaria, HIV and tuberculosis. Nature reviews. Drug discovery 23 (6) (2024)
Maëlle Duffey, Robert W Shafer, Juliano Timm, Jeremy N Burrows, Nader Fotouhi, Mark Cockett, Didier Leroy
Combating antimicrobial resistance in malaria, HIV and tuberculosis. Nature reviews. Drug discovery 23 (6) (2024)
Maëlle Duffey, Robert W Shafer, Juliano Timm, Jeremy N Burrows, Nader Fotouhi, Mark Cockett, Didier Leroy
Combating antimicrobial resistance in malaria, HIV and tuberculosis. Nature reviews. Drug discovery (2024)
Carolyn Chu, Kaiming Tao, Vinie Kouamou, Ava Avalos, Jake Scott, Philip M Grant, Soo-Yon Rhee, Suzanne M McCluskey, Michael R Jordan, Rebecca L Morgan, Robert W Shafer
Prevalence of Emergent Dolutegravir Resistance Mutations in People Living with HIV: A Rapid Scoping Review. Viruses 16 (3) (2024)
Carolyn Chu, Kaiming Tao, Vinie Kouamou, Ava Avalos, Jake Scott, Philip M Grant, Soo-Yon Rhee, Suzanne M McCluskey, Michael R Jordan, Rebecca L Morgan, Robert W Shafer
Prevalence of Emergent Dolutegravir Resistance Mutations in People Living with HIV: A Rapid Scoping Review. Viruses 16 (3) (2024)
Maëlle Duffey, Robert W Shafer, Juliano Timm, Jeremy N Burrows, Nader Fotouhi, Mark Cockett, Didier Leroy
Combating antimicrobial resistance in malaria, HIV and tuberculosis. Nature reviews. Drug discovery 23 (6) (2024)
Carolyn Chu, Kaiming Tao, Vinie Kouamou, Ava Avalos, Jake Scott, Philip M Grant, Soo-Yon Rhee, Suzanne M McCluskey, Michael R Jordan, Rebecca L Morgan, Robert W Shafer
Prevalence of Emergent Dolutegravir Resistance Mutations in People Living with HIV: A Rapid Scoping Review. Viruses 16 (3) (2024)
Carolyn Chu, Kaiming Tao, Vinie Kouamou, Ava Avalos, Jake Scott, Philip M Grant, Soo-Yon Rhee, Suzanne M McCluskey, Michael R Jordan, Rebecca L Morgan, Robert W Shafer
Prevalence of Emergent Dolutegravir Resistance Mutations in People Living with HIV: A Rapid Scoping Review. Viruses 16 (3) (2024)
Kaiming Tao, Soo-Yon Rhee, Philip L Tzou, Susan P Holmes, Robert W Shafer
Highly Ambiguous HIV-1 Pol Positions Encoding Multiple Amino Acids Usually Result from Antiviral or Immune Selection Pressure. AIDS research and human retroviruses (2023)
Seth C Inzaule, Mark J Siedner, Susan J Little, Santiago Avila-Ríos, Alisen Ayitewala, Ronald J Bosch, Vincent Calvez, Francesca Ceccherini-Silberstein, Charlotte Charpentier, Diane Descamps, Susan H Eshleman, Joseph Fokam, Lisa M Frenkel, Ravindra K Gupta, John P A Ioannidis, Pontiano Kaleebu, Rami Kantor, Seble G Kassaye, Sergei L Kosakovsky Pond, Vinie Kouamou, Roger D Kouyos, Daniel R Kuritzkes, Richard J Lessells, Anne-Genevieve Marcelin, Stefan D Baral, Brian Minalga, Nicaise Ndembi, Richard A Neher, Roger Paredes, Deenan Pillay, Elliot G Raizes, Soo-Yon Rhee, Douglas D Richman, Kiat Ruxrungtham, Pardis C Sabeti, Jonathan M Schapiro, Sunee Sirivichayakul, Kim Steegen, Wataru Sugiura, Gert U van Zyl, Anne-Mieke Vandamme, Annemarie M J Wensing, Joel O Wertheim, Huldrych F Gunthard, Michael R Jordan, Robert W Shafer
Recommendations on data sharing in HIV drug resistance research. PLoS medicine 20 (9) (2023)
Kaiming Tao, Soo-Yon Rhee, Carolyn Chu, Ava Avalos, Amrit K Ahluwalia, Ravindra K Gupta, Michael R Jordan, Robert W Shafer
Treatment Emergent Dolutegravir Resistance Mutations in Individuals Naïve to HIV-1 Integrase Inhibitors: A Rapid Scoping Review. Viruses 15 (9) (2023)
Kaiming Tao, Soo-Yon Rhee, Philip L Tzou, Zachary A Osman, Sergei L Kosakovsky Pond, Susan P Holmes, Robert W Shafer
HIV-1 Group M Capsid Amino Acid Variability: Implications for Sequence Quality Control of Genotypic Resistance Testing. Viruses 15 (4) (2023)
Janin Nouhin, Philip L Tzou, Soo-Yon Rhee, Malaya Kumar Sahoo, Benjamin A Pinsky, Miri A Krupkin, Joseph D Puglisi, Elisabetta Viani Puglisi, Robert W Shafer
HIV-1 5'-Leader Mutations in Plasma Viruses Before and After the Development of Reverse Transcriptase Inhibitor-Resistance Mutations. medRxiv : the preprint server for health sciences (2023)
Kaiming Tao, Soo-Yon Rhee, Philip L Tzou, Zachary A Osman, Sergei L Kosakovsky Pond, Susan P Holmes, Robert W Shafer
HIV-1 Group M Capsid Amino Acid Variability: Implications for Sequence Quality Control of Genotypic Resistance Testing. Viruses 15 (4) (2023)
Kaiming Tao, Soo-Yon Rhee, Philip L Tzou, Zachary A Osman, Sergei L Kosakovsky Pond, Susan P Holmes, Robert W Shafer
HIV-1 Group M Capsid Amino Acid Variability: Implications for Sequence Quality Control of Genotypic Resistance Testing. Viruses 15 (4) (2023)
Kaiming Tao, Soo-Yon Rhee, Philip L Tzou, Susan P Holmes, Robert W Shafer
Highly Ambiguous HIV-1 Pol Positions Encoding Multiple Amino Acids Usually Result from Antiviral or Immune Selection Pressure. AIDS research and human retroviruses 39 (3) (2023)
Kaiming Tao, Soo-Yon Rhee, Philip L Tzou, Zachary A Osman, Sergei L Kosakovsky Pond, Susan P Holmes, Robert W Shafer
HIV-1 Group M Capsid Amino Acid Variability: Implications for Sequence Quality Control of Genotypic Resistance Testing. Viruses 15 (4) (2023)
Kaiming Tao, Soo-Yon Rhee, Philip L Tzou, Susan P Holmes, Robert W Shafer
Highly Ambiguous HIV-1 Pol Positions Encoding Multiple Amino Acids Usually Result from Antiviral or Immune Selection Pressure. AIDS research and human retroviruses 39 (3) (2023)
Christophe T Tchakoute, Soo-Yon Rhee, C Bradley Hare, Robert W Shafer, Kristin Sainani
Adherence to contemporary antiretroviral treatment regimens and impact on immunological and virologic outcomes in a US healthcare system. PloS one 17 (2) (2022)
Seble G Kassaye, Zehava Grossman, Priyanka Vengurlekar, William Chai, Megan Wallace, Soo-Yon Rhee, William A Meyer, Harvey W Kaufman, Amanda Castel, Jeanne Jordan, Keith A Crandall, Alisa Kang, Princy Kumar, David A Katzenstein, Robert W Shafer, Frank Maldarelli
Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States. Viruses 15 (1) (2022)
Seble G Kassaye, Zehava Grossman, Priyanka Vengurlekar, William Chai, Megan Wallace, Soo-Yon Rhee, William A Meyer, Harvey W Kaufman, Amanda Castel, Jeanne Jordan, Keith A Crandall, Alisa Kang, Princy Kumar, David A Katzenstein, Robert W Shafer, Frank Maldarelli
Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States. Viruses 15 (1) (2022)
Carolyn Chu, Daniele Armenia, Charles Walworth, Maria M Santoro, Robert W Shafer
Genotypic Resistance Testing of HIV-1 DNA in Peripheral Blood Mononuclear Cells. Clinical microbiology reviews (2022)
Seble G Kassaye, Zehava Grossman, Priyanka Vengurlekar, William Chai, Megan Wallace, Soo-Yon Rhee, William A Meyer, Harvey W Kaufman, Amanda Castel, Jeanne Jordan, Keith A Crandall, Alisa Kang, Princy Kumar, David A Katzenstein, Robert W Shafer, Frank Maldarelli
Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States. Viruses 15 (1) (2022)
Seble G Kassaye, Zehava Grossman, Priyanka Vengurlekar, William Chai, Megan Wallace, Soo-Yon Rhee, William A Meyer, Harvey W Kaufman, Amanda Castel, Jeanne Jordan, Keith A Crandall, Alisa Kang, Princy Kumar, David A Katzenstein, Robert W Shafer, Frank Maldarelli
Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States. Viruses 15 (1) (2022)
Seble G Kassaye, Zehava Grossman, Priyanka Vengurlekar, William Chai, Megan Wallace, Soo-Yon Rhee, William A Meyer, Harvey W Kaufman, Amanda Castel, Jeanne Jordan, Keith A Crandall, Alisa Kang, Princy Kumar, David A Katzenstein, Robert W Shafer, Frank Maldarelli
Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States. Viruses 15 (1) (2022)
Kaiming Tao, Philip L Tzou, Sergei L Kosakovsky Pond, John P A Ioannidis, Robert W Shafer
Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-analysis. Microbiology spectrum 10 (4) (2022)
Philip L Tzou, Kaiming Tao, Sergei L Kosakovsky Pond, Robert W Shafer
Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons. PloS one 17 (3) (2022)
Soo-Yon Rhee, Michael Boehm, Olga A Tarasova, Giulia Di Teodoro, Ana Barroso Abecasis, Anders Sönnerborg, Alexander J Bailey, Dmitry Kireev, Maurizio Zazzi, null The EuResist Network Study Group, Robert W Shafer
Spectrum of Atazanavir-Selected Protease Inhibitor-Resistance Mutations. Pathogens (Basel, Switzerland) 11 (5) (2022)
Soo-Yon Rhee, Philip L Tzou, Robert W Shafer
Temporal Trends in HIV-1 Mutations Used for the Surveillance of Transmitted Drug Resistance. Viruses 13 (5) (2021)
Kaiming Tao, Philip L Tzou, Janin Nouhin, Ravindra K Gupta, Tulio de Oliveira, Sergei L Kosakovsky Pond, Daniela Fera, Robert W Shafer
The biological and clinical significance of emerging SARS-CoV-2 variants. Nature reviews. Genetics 22 (12) (2021)
Philip L Tzou, Kaiming Tao, Janin Nouhin, Soo-Yon Rhee, Benjamin D Hu, Shruti Pai, Neil T Parkin, Robert W Shafer
Coronavirus Antiviral Research Database (CoV-RDB): An Online Database Designed to Facilitate Comparisons between Candidate Anti-Coronavirus Compounds. Viruses 12 (9) (2020)
Roger Paredes, Philip L Tzou, Gert van Zyl, Geoff Barrow, Ricardo Camacho, Sergio Carmona, Philip M Grant, Ravindra K Gupta, Raph L Hamers, P Richard Harrigan, Michael R Jordan, Rami Kantor, David A Katzenstein, Daniel R Kuritzkes, Frank Maldarelli, Dan Otelea, Carole L Wallis, Jonathan M Schapiro, Robert W Shafer
Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation. PloS one 12 (7) (2017)