Rubén Pérez (Ruben Perez)

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 37

Top Topics

Atomic Force Microscopy

Top Venues

Journal of chemical theory and computation

Journal of chemical information and modeling

ACS applied materials & interfaces

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Antonio M Bosch, Horacio V Guzman, Rubén Pérez
Adsorption-Driven Deformation and Footprints of the RBD Proteins in SARS-CoV-2 Variants on Biological and Inanimate Surfaces. Journal of chemical information and modeling 64 (15) (2024)
Carlos Roldán-Piñero, Juan Luengo-Márquez, Salvatore Assenza, Rubén Pérez
Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA. Journal of chemical theory and computation 20 (5) (2024)
Carlos Roldán-Piñero, Juan Luengo-Márquez, Salvatore Assenza, Rubén Pérez
Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA. Journal of chemical theory and computation 20 (5) (2024)
Oscar Custance, Emiliano Ventura-Macias, Oleksandr Stetsovych, Carlos Romero-Muñiz, Tomoko K Shimizu, Pablo Pou, Masayuki Abe, Hironobu Hayashi, Tadakatsu Ohkubo, Shigeki Kawai, Rubén Pérez
Structure and Defect Identification at Self-Assembled Islands of CO 2 Using Scanning Probe Microscopy. ACS nano (2024)
Antonio M Bosch, Horacio V Guzman, Rubén Pérez
Adsorption-Driven Deformation and Footprints of the RBD Proteins in SARS-CoV-2 Variants on Biological and Inanimate Surfaces. Journal of chemical information and modeling 64 (15) (2024)
Carlos Roldán-Piñero, Juan Luengo-Márquez, Salvatore Assenza, Rubén Pérez
Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA. Journal of chemical theory and computation 20 (5) (2024)
Antonio M Bosch, Horacio V Guzman, Rubén Pérez
Adsorption-Driven Deformation and Footprints of the RBD Proteins in SARS-CoV-2 Variants on Biological and Inanimate Surfaces. Journal of chemical information and modeling 64 (15) (2024)
Carlos Roldán-Piñero, Juan Luengo-Márquez, Salvatore Assenza, Rubén Pérez
Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA. Journal of chemical theory and computation (2024)
Antonio M Bosch, Horacio V Guzman, Rubén Pérez
Adsorption-Driven Deformation and Footprints of the RBD Proteins in SARS-CoV-2 Variants on Biological and Inanimate Surfaces. Journal of chemical information and modeling 64 (15) (2024)
Antonio M Bosch, Horacio V Guzman, Rubén Pérez
Adsorption-Driven Deformation and Footprints of the RBD Proteins in SARS-CoV-2 Variants on Biological and Inanimate Surfaces. Journal of chemical information and modeling (2024)
Carlos Roldán-Piñero, Juan Luengo-Márquez, Salvatore Assenza, Rubén Pérez
Systematic Comparison of Atomistic Force Fields for the Mechanical Properties of Double-Stranded DNA. Journal of chemical theory and computation 20 (5) (2024)
Juan Luengo-Márquez, Juan Zalvide-Pombo, Rubén Pérez, Salvatore Assenza
Force-dependent elasticity of nucleic acids. Nanoscale (2023)
Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pablo Pou, Rubén Pérez
Molecular Identification from AFM Images Using the IUPAC Nomenclature and Attribute Multimodal Recurrent Neural Networks. ACS applied materials & interfaces 15 (18) (2023)
Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pablo Pou, Rubén Pérez
Molecular Identification from AFM Images Using the IUPAC Nomenclature and Attribute Multimodal Recurrent Neural Networks. ACS applied materials & interfaces 15 (18) (2023)
Carlos Roldán-Piñero, Carlos Romero-Muñiz, Ismael Diez-Perez, Guilherme Vilhena, Rubén Pérez, Juan Carlos Cuevas, Linda Angela Zotti
Efficient Electron Hopping Transport through Azurin-Based Junctions. The journal of physical chemistry letters (2023)
Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pablo Pou, Rubén Pérez
Molecular Identification from AFM Images Using the IUPAC Nomenclature and Attribute Multimodal Recurrent Neural Networks. ACS applied materials & interfaces (2023)
Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pablo Pou, Rubén Pérez
Molecular Identification from AFM Images Using the IUPAC Nomenclature and Attribute Multimodal Recurrent Neural Networks. ACS applied materials & interfaces 15 (18) (2023)
Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pablo Pou, Rubén Pérez
Molecular Identification from AFM Images Using the IUPAC Nomenclature and Attribute Multimodal Recurrent Neural Networks. ACS applied materials & interfaces 15 (18) (2023)
Abhilash Kannan, Maarit Suomalainen, Romain Volle, Michael Bauer, Marco Amsler, Hung V Trinh, Stefano Vavassori, Jana Pachlopnik Schmid, Guilherme Vilhena, Alberto Marín-González, Rubén Pérez, Andrea Franceschini, Christian von Mering, Silvio Hemmi, Urs F Greber
Sequence-Specific Features of Short Double-Strand, Blunt-End RNAs Have RIG-I- and Type 1 Interferon-Dependent or -Independent Anti-Viral Effects. Viruses 14 (7) (2022)
Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pablo Pou, Rubén Pérez
QUAM-AFM: A Free Database for Molecular Identification by Atomic Force Microscopy. Journal of chemical information and modeling 62 (5) (2022)
Salvatore Assenza, Rubén Pérez
Accurate Sequence-Dependent Coarse-Grained Model for Conformational and Elastic Properties of Double-Stranded DNA. Journal of chemical theory and computation 18 (5) (2022)
Guilherme Vilhena, Maria Ortega, Manuel R Uhlig, Ricardo Garcia, Rubén Pérez
Practical Guide to Single-Protein AFM Nanomechanical Spectroscopy Mapping: Insights and Pitfalls As Unraveled by All-Atom MD Simulations on Immunoglobulin G. ACS sensors 6 (2) (2021)
Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Rubén Pérez
A Deep Learning Approach for Molecular Classification Based on AFM Images. Nanomaterials (Basel, Switzerland) 11 (7) (2021)
Percy Zahl, Aliaksandr V Yakutovich, Emiliano Ventura-Macías, Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pablo Pou, Jerzy T Sadowski, Mark S Hybertsen, Rubén Pérez
Hydrogen bonded trimesic acid networks on Cu(111) reveal how basic chemical properties are imprinted in HR-AFM images. Nanoscale 13 (44) (2021)
Jalmar Tschakert, Qigang Zhong, Daniel Martin-Jimenez, Jaime Carracedo-Cosme, Carlos Romero-Muñiz, Pascal Henkel, Tobias Schlöder, Sebastian Ahles, Doreen Mollenhauer, Hermann A Wegner, Pablo Pou, Rubén Pérez, André Schirmeisen, Daniel Ebeling
Surface-controlled reversal of the selectivity of halogen bonds. Nature communications 11 (1) (2020)
Carlos Romero-Muñiz, María Ortega, Guilherme Vilhena, Ismael Diez-Perez, Juan Carlos Cuevas, Rubén Pérez, Linda Angela Zotti
Mechanical Deformation and Electronic Structure of a Blue Copper Azurin in a Solid-State Junction. Biomolecules 9 (9) (2019)
Alberto Marin-Gonzalez, Guilherme Vilhena, Fernando Moreno-Herrero, Rubén Pérez
Sequence-dependent mechanical properties of double-stranded RNA. Nanoscale 11 (44) (2019)
Rémy Pawlak, Guilherme Vilhena, Philipp D'Astolfo, Xunshan Liu, Giacomo Prampolini, Tobias Meier, Thilo Glatzel, Justin A Lemkul, Robert Häner, Silvio Decurtins, Alexis Baratoff, Rubén Pérez, Shi-Xia Liu, Ernst Meyer
Sequential Bending and Twisting around C-C Single Bonds by Mechanical Lifting of a Pre-Adsorbed Polymer. Nano letters 20 (1) (2019)
Maria Ortega, Guilherme Vilhena, Pamela Rubio-Pereda, P A Serena, Rubén Pérez
Assessing the Accuracy of Different Solvation Models To Describe Protein Adsorption. Journal of chemical theory and computation 15 (4) (2019)
Rémy Pawlak, Guilherme Vilhena, Antoine Hinaut, Tobias Meier, Thilo Glatzel, Alexis Baratoff, Enrico Gnecco, Rubén Pérez, Ernst Meyer
Conformations and cryo-force spectroscopy of spray-deposited single-strand DNA on gold. Nature communications 10 (1) (2019)
Michael Ellner, Pablo Pou, Rubén Pérez
Molecular Identification, Bond Order Discrimination, and Apparent Intermolecular Features in Atomic Force Microscopy Studied with a Charge Density Based Method. ACS nano 13 (1) (2019)
Carlos Romero-Muñiz, María Ortega, Guilherme Vilhena, Ismael Diez-Perez, Juan Carlos Cuevas, Rubén Pérez, Linda Angela Zotti
Ab initio electronic structure calculations of entire blue copper azurins. Physical chemistry chemical physics : PCCP 20 (48) (2018)
Milica Todorović, Oleksandr Stetsovych, César Moreno, Tomoko K Shimizu, Oscar Custance, Rubén Pérez
Pentacene/TiO2 Anatase Hybrid Interface Study by Scanning Probe Microscopy and First Principles Calculations. ACS applied materials & interfaces 10 (40) (2018)
Carlos Romero-Muñiz, Ana Martín-Recio, Pablo Pou, José M Gómez-Rodríguez, Rubén Pérez
Unveiling the atomistic mechanisms for oxygen intercalation in a strongly interacting graphene-metal interface. Physical chemistry chemical physics : PCCP 20 (19) (2018)
J G Vilhena, Enrico Gnecco, Rémy Pawlak, Fernando Moreno-Herrero, Ernst Meyer, Rubén Pérez
Stick-Slip Motion of ssDNA over Graphene. The journal of physical chemistry. B 122 (2) (2017)
Marta P Ruiz, Albert C Aragonès, Nuria Camarero, J G Vilhena, Maria Ortega, Linda Angela Zotti, Rubén Pérez, Juan Carlos Cuevas, Pau Gorostiza, Ismael Diez-Perez
Bioengineering a Single-Protein Junction. Journal of the American Chemical Society 139 (43) (2017)
Alberto Marin-Gonzalez, J G Vilhena, Rubén Pérez, Fernando Moreno-Herrero
Understanding the mechanical response of double-stranded DNA and RNA under constant stretching forces using all-atom molecular dynamics. Proceedings of the National Academy of Sciences of the United States of America 114 (27) (2017)
Oleksandr Stetsovych, Milica Todorović, Tomoko K Shimizu, César Moreno, James William Ryan, Carmen Pérez León, Keisuke Sagisaka, Emilio Palomares, Vladimír Matolín, Daisuke Fujita, Rubén Pérez, Oscar Custance
Atomic species identification at the (101) anatase surface by simultaneous scanning tunnelling and atomic force microscopy. Nature communications 6 (2015)