Christian von Mering

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 25

Top Topics

Network Analysis

Antimicrobial Resistance

Embryonic Stem Cells

Dna Methylation

Top Venues

Nature ecology & evolution

Nucleic acids research

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution 8 (5) (2024)
Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution 8 (5) (2024)
Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution 8 (5) (2024)
Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution (2024)
Tülay Karakulak, Damian Szklarczyk, Cemil Can Saylan, Holger Moch, Christian von Mering, Alexandre Thiéry
CanIsoNet: a database to study the functional impact of isoform switching events in diseases. Bioinformatics advances 3 (1) (2023)
Tülay Karakulak, Damian Szklarczyk, Cemil Can Saylan, Holger Moch, Christian von Mering, Alexandre Thiéry
CanIsoNet: a database to study the functional impact of isoform switching events in diseases. Bioinformatics advances 3 (1) (2023)
Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, Carlos P Cantalapiedra, Joaquín Giner-Lamia, Daniel R Mende, Rebecca Kirsch, Thomas Rattei, Ivica Letunic, Lars Juhl Jensen, Peer Bork, Christian von Mering, Huerta-Cepas Jaime
eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic acids research (2022)
Abhilash Kannan, Maarit Suomalainen, Romain Volle, Michael Bauer, Marco Amsler, Hung V Trinh, Stefano Vavassori, Jana Pachlopnik Schmid, Guilherme Vilhena, Alberto Marín-González, Rubén Pérez, Andrea Franceschini, Christian von Mering, Silvio Hemmi, Urs F Greber
Sequence-Specific Features of Short Double-Strand, Blunt-End RNAs Have RIG-I- and Type 1 Interferon-Dependent or -Independent Anti-Viral Effects. Viruses 14 (7) (2022)
Annika L Gable, Damian Szklarczyk, David Lyon, João F Matias Rodrigues, Christian von Mering
Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments. Briefings in bioinformatics 23 (5) (2022)
Senka Causevic, Janko Tackmann, Vladimir Sentchilo, Christian von Mering, Jan Roelof Van der Meer
Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation. mSystems 7 (2) (2022)
Anthony Fullam, Ivica Letunic, Thomas Sebastian Benedikt Schmidt, Quinten R Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M Maistrenko, Lukas Malfertheiner, Alessio Milanese, Joao Frederico Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Huerta-Cepas Jaime, Christian von Mering, Peer Bork, Daniel R Mende
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic acids research (2022)
Matthew A Reyna, David Haan, Marta Paczkowska, Lieven P C Verbeke, Miguel Vazquez, Alexandre Thiéry, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad A Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose M G Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, null null, Jüri Reimand, Joshua M Stuart, Benjamin J Raphael, null null
Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes. Nature communications 13 (1) (2022)
Damian Szklarczyk, Rebecca Kirsch, Mikaela Koutrouli, Katerina C Nastou, Farrokh Mehryary, Radja Hachilif, Annika L Gable, Tao Fang, Nadezhda Tsankova Doncheva, Sampo Pyysalo, Peer Bork, Lars J Jensen, Christian von Mering
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic acids research (2022)
Marija Dmitrijeva, Christian R Kahlert, Rounak Feigelman, Rebekka L Kleiner, Oliver Nolte, Werner C Albrich, Florent Baty, Christian von Mering
Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis. mBio 12 (2) (2021)
Rodrigo Villaseñor, Ramon Pfaendler, Christina Ambrosi, Stefan Butz, Sara Giuliani, Elana Bryan, Thomas W Sheahan, Annika L Gable, Nina Schmolka, Massimiliano Manzo, Joël Wirz, Christian Feller, Christian von Mering, Ruedi Aebersold, Philipp Voigt, Tuncay Baubec
ChromID identifies the protein interactome at chromatin marks. Nature biotechnology 38 (6) (2020)
Oleksandr M Maistrenko, Daniel R Mende, Mechthild Luetge, Falk Hildebrand, Thomas S B Schmidt, Simone S Li, Joao Frederico Matias Rodrigues, Christian von Mering, Luis Pedro Coelho, Jaime Huerta-Cepas, Shinichi Sunagawa, Peer Bork
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity. The ISME journal 14 (5) (2020)
Matthew A Reyna, David Haan, Marta Paczkowska, Lieven P C Verbeke, Miguel Vazquez, Alexandre Thiéry, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad A Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose M G Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, null null, Jüri Reimand, Joshua M Stuart, Benjamin J Raphael, null null
Pathway and network analysis of more than 2500 whole cancer genomes. Nature communications 11 (1) (2020)
Davide Heller, Damian Szklarczyk, Christian von Mering
Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies. BMC bioinformatics 20 (1) (2019)
Janko Tackmann, Natasha Arora, Thomas Sebastian Benedikt Schmidt, João Frederico Matias Rodrigues, Christian von Mering
Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites. Microbiome 6 (1) (2018)
Irina Leonardi, Alexandra Gerstgrasser, Thomas Sebastian Benedikt Schmidt, Flora Nicholls, Bernhard Tewes, Roland Greinwald, Christian von Mering, Gerhard Rogler, Isabelle Frey-Wagner
Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression. Scientific reports 7 (1) (2017)
Rounak Feigelman, Christian R Kahlert, Florent Baty, Frank Rassouli, Rebekka L Kleiner, Philipp Kohler, Martin H Brutsche, Christian von Mering
Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details. Microbiome 5 (1) (2017)
Pascal Leuenberger, Stefan Ganscha, Alexandre Thiéry, Valentina Cappelletti, Paul J Boersema, Christian von Mering, Manfred Claassen, Paola Picotti
Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability. Science (New York, N.Y.) 355 (6327) (2017)
Adrian M Altenhoff, Brigitte Boeckmann, Salvador Capella-Gutierrez, Daniel A Dalquen, Todd DeLuca, Sofia Kirke Forslund-Startceva, Jaime Huerta-Cepas, Benjamin Linard, Cécile Pereira, Leszek P Pryszcz, Fabian Schreiber, Alan Sousa da Silva, Damian Szklarczyk, Clément-Marie Train, Peer Bork, Odile Lecompte, Christian von Mering, Ioannis Xenarios, Kimmen Sjölander, Lars Juhl Jensen, Maria J Martin, Matthieu Muffato, null null, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, Christophe Dessimoz
Standardized benchmarking in the quest for orthologs. Nature methods 13 (5) (2016)
Damian Szklarczyk, John H Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T Doncheva, Alexander Roth, Peer Bork, Lars J Jensen, Christian von Mering
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic acids research 45 (D1) (2016)
Thomas Sebastian Benedikt Schmidt, João Frederico Matias Rodrigues, Christian von Mering
A family of interaction-adjusted indices of community similarity. The ISME journal 11 (3) (2016)
Christina Warinner, João F Matias Rodrigues, Rounak Vyas, Christian Trachsel, Natallia Shved, Jonas Grossmann, Anita Radini, Y Hancock, Raul Y Tito, Sarah Fiddyment, Camilla Speller, Jessica Hendy, Sophy Charlton, Hans Ulrich Luder, Domingo C Salazar-García, Elisabeth Eppler, Roger Seiler, Lars H Hansen, José Alfredo Samaniego Castruita, Simon Barkow-Oesterreicher, Kai Yik Teoh, Christian D Kelstrup, Jesper V Olsen, Paolo Nanni, Toshihisa Kawai, Eske Willerslev, Christian von Mering, Cecil M Lewis, Matthew J Collins, M Thomas P Gilbert, Frank Rühli, Enrico Cappellini
Pathogens and host immunity in the ancient human oral cavity. Nature genetics 46 (4) (2014)
Martin Soste, Rita Hrabakova, Stefanie Wanka, Andre Melnik, Paul Boersema, Alessio Maiolica, Timon Wernas, Marco Tognetti, Christian von Mering, Paola Picotti
A sentinel protein assay for simultaneously quantifying cellular processes. Nature methods 11 (10) (2014)