Ruth E Baker (R E Baker)

Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 22

Top Venues

Journal of the Royal Society, Interface

Proceedings. Mathematical, physical, and engineering sciences

PLoS computational biology

Proceedings of the National Academy of Sciences of the United States of America

University of Oxford

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Oxford Jan 01 2017

United Kingdom

Professor of Applied Mathematics :: Mathematical Institute

University of Oxford Jan 10 2010 - Dec 31 2016

United Kingdom

Associate Professor :: Mathematical Institute

Publications

Yue Liu, Kevin Suh, Philip K Maini, Daniel J Cohen, Ruth E Baker
Parameter identifiability and model selection for partial differential equation models of cell invasion. Journal of the Royal Society, Interface 21 (212) (2024)
Yue Liu, Kevin Suh, Philip K Maini, Daniel J Cohen, Ruth E Baker
Parameter identifiability and model selection for partial differential equation models of cell invasion. Journal of the Royal Society, Interface 21 (212) (2024)
Yue Liu, Kevin Suh, Philip K Maini, Daniel J Cohen, Ruth E Baker
Parameter identifiability and model selection for partial differential equation models of cell invasion. Journal of the Royal Society, Interface 21 (212) (2024)
Simon F Martina-Perez, Isaac B Breinyn, Daniel J Cohen, Ruth E Baker
Spatial heterogeneity in collective electrotaxis: continuum modelling and applications to optimal control. bioRxiv : the preprint server for biology (2024)
Yue Liu, Kevin Suh, Philip K Maini, Daniel J Cohen, Ruth E Baker
Parameter identifiability and model selection for partial differential equation models of cell invasion. Journal of the Royal Society, Interface 21 (212) (2024)
Simon F Martina-Perez, Isaac B Breinyn, Daniel J Cohen, Ruth E Baker
Spatial heterogeneity in collective electrotaxis: continuum modelling and applications to optimal control. bioRxiv : the preprint server for biology (2024)
William Duncan Martinson, Rebecca McLennan, Jessica M Teddy, Mary C McKinney, Lance A Davidson, Ruth E Baker, Helen M Byrne, Paul M Kulesa, Philip K Maini
Dynamic fibronectin assembly and remodeling by leader neural crest cells prevents jamming in collective cell migration. eLife 12 (2023)
Carles Falcó, Daniel J Cohen, José Antonio Carrillo, Ruth E Baker
Quantifying tissue growth, shape and collision via continuum models and Bayesian inference. Journal of the Royal Society, Interface 20 (204) (2023)
Simon F Martina-Perez, Heba Z Sailem, Ruth E Baker
Efficient Bayesian inference for mechanistic modelling with high-throughput data. PLoS computational biology 18 (6) (2022)
Ryan J Murphy, Pascal R Buenzli, Tamara A Tambyah, Erik W Thompson, Honor J Hugo, Ruth E Baker, Matthew J Simpson
The role of mechanical interactions in EMT. Physical biology 18 (4) (2021)
Matthew J Simpson, Alexander P Browning, Christopher C Drovandi, Elliot J Carr, Oliver J Maclaren, Ruth E Baker
Profile likelihood analysis for a stochastic model of diffusion in heterogeneous media. Proceedings. Mathematical, physical, and engineering sciences 477 (2250) (2021)
Simon F Martina-Perez, Matthew J Simpson, Ruth E Baker
Bayesian uncertainty quantification for data-driven equation learning. Proceedings. Mathematical, physical, and engineering sciences 477 (2254) (2021)
Ryan J Murphy, Pascal R Buenzli, Ruth E Baker, Matthew J Simpson
Mechanical Cell Competition in Heterogeneous Epithelial Tissues. Bulletin of mathematical biology 82 (10) (2020)
John H Lagergren, John T Nardini, Ruth E Baker, Matthew J Simpson, Kevin B Flores
Biologically-informed neural networks guide mechanistic modeling from sparse experimental data. PLoS computational biology 16 (12) (2020)
Ruth E Baker, Jose-Maria Peña, Jayaratnam Jayamohan, Antoine Jérusalem
Mechanistic models versus machine learning, a fight worth fighting for the biological community? Biology letters 14 (5) (2019)
Xiao-Shan Wu, Chao-Yuan Yeh, Hans I-Chen Harn, Ting-Xing Jiang, Ping Wu, Randall Bruce Widelitz, Ruth E Baker, Cheng Ming Chuong
Self-assembly of biological networks via adaptive patterning revealed by avian intradermal muscle network formation. Proceedings of the National Academy of Sciences of the United States of America 116 (22) (2019)
Ryan J Murphy, Pascal R Buenzli, Ruth E Baker, Matthew J Simpson
A one-dimensional individual-based mechanical model of cell movement in heterogeneous tissues and its coarse-grained approximation. Proceedings. Mathematical, physical, and engineering sciences 475 (2227) (2019)
Andrew Parker, Matthew J Simpson, Ruth E Baker
The impact of experimental design choices on parameter inference for models of growing cell colonies. Royal Society open science 5 (8) (2018)
Stefan Engblom, Daniel B Wilson, Ruth E Baker
Scalable population-level modelling of biological cells incorporating mechanics and kinetics in continuous time. Royal Society open science 5 (8) (2018)
Jonathan U Harrison, Ruth E Baker
The impact of temporal sampling resolution on parameter inference for biological transport models. PLoS computational biology 14 (6) (2018)
Mingxing Lei, Linus J Schumacher, Yung-Chih Lai, Wen-Tau Juan, Chao-Yuan Yeh, Ping Wu, Ting-Xin Jiang, Ruth E Baker, Randall Bruce Widelitz, Li Yang, Cheng-Ming Chuong
Self-organization process in newborn skin organoid formation inspires strategy to restore hair regeneration of adult cells. Proceedings of the National Academy of Sciences of the United States of America 114 (34) (2017)
C Lester, Christian A Yates, Ruth E Baker
Efficient parameter sensitivity computation for spatially extended reaction networks. The Journal of chemical physics 146 (4) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ruth E Baker (R E Baker)