Sander Granneman

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 30

Top Venues

Nature communications

Nature

Life science alliance

PLoS pathogens

University of Edinburgh

Vrije Universiteit Amsterdam (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Edinburgh Jan 01 2018

United Kingdom

Medical Research Council Senior Research Fellow and Group Leader :: Centre for Synthetic and Systems BiologySynthSys

University of Edinburgh Mar 01 2011 - Dec 31 2017

United Kingdom

Wellcome Trust RCDF Principal Investigator :: Centre for Synthetic and Systems Biology

University of Edinburgh Oct 02 2006 - Mar 01 2011

United Kingdom

Postdoctoral Fellow :: Wellcome Trust Centre for Cell Biology

Yale University School of Medicine Jun 01 2003 - Jul 01 2006

United States

Postdoctoral Fellow :: Department of Molecular Biophysics and Biochemistry

Radboud Universiteit Nijmegen Oct 01 1998 - Jan 31 2003

Netherlands

PhD Student :: Biochemistry Department

Education History

Vrije Universiteit Amsterdam Sep 01 1994 - Aug 31 1998

Netherlands

MSC :: Faculty of Biology

Publications

Lyudmila Dimitrova-Paternoga, Sergo Kasvandik, Bertrand Beckert, Sander Granneman, Tanel Tenson, Daniel N Wilson, Helge Paternoga
Structural basis of ribosomal 30S subunit degradation by RNase R. Nature 626 (8001) (2024)
Lyudmila Dimitrova-Paternoga, Sergo Kasvandik, Bertrand Beckert, Sander Granneman, Tanel Tenson, Daniel N Wilson, Helge Paternoga
Structural basis of ribosomal 30S subunit degradation by RNase R. Nature 626 (8001) (2024)
Lyudmila Dimitrova-Paternoga, Sergo Kasvandik, Bertrand Beckert, Sander Granneman, Tanel Tenson, Daniel N Wilson, Helge Paternoga
Structural basis of ribosomal 30S subunit degradation by RNase R. Nature (2024)
Liang-Cui Chu, Niki Christopoulou, Hugh McCaughan, Sophie Winterbourne, Davide Cazzola, Shichao Wang, Ulad Litvin, Salomé Brunon, Patrick Jb Harker, Iain McNae, Sander Granneman
pyRBDome: a comprehensive computational platform for enhancing RNA-binding proteome data. Life science alliance 7 (10) (2024)
Lyudmila Dimitrova-Paternoga, Sergo Kasvandik, Bertrand Beckert, Sander Granneman, Tanel Tenson, Daniel N Wilson, Helge Paternoga
Structural basis of ribosomal 30S subunit degradation by RNase R. Nature 626 (8001) (2024)
Lyudmila Dimitrova-Paternoga, Sergo Kasvandik, Bertrand Beckert, Sander Granneman, Tanel Tenson, Daniel N Wilson, Helge Paternoga
Structural basis of ribosomal 30S subunit degradation by RNase R. Nature 626 (8001) (2024)
Liang-Cui Chu, Niki Christopoulou, Hugh McCaughan, Sophie Winterbourne, Davide Cazzola, Shichao Wang, Ulad Litvin, Salomé Brunon, Patrick Jb Harker, Iain McNae, Sander Granneman
pyRBDome: a comprehensive computational platform for enhancing RNA-binding proteome data. Life science alliance 7 (10) (2024)
Lyudmila Dimitrova-Paternoga, Sergo Kasvandik, Bertrand Beckert, Sander Granneman, Tanel Tenson, Daniel N Wilson, Helge Paternoga
Structural basis of ribosomal 30S subunit degradation by RNase R. Nature (2024)
Lyudmila Dimitrova-Paternoga, Sergo Kasvandik, Bertrand Beckert, Sander Granneman, Tanel Tenson, Daniel N Wilson, Helge Paternoga
Structural basis of ribosomal 30S subunit degradation by RNase R. Nature (2024)
Liang-Cui Chu, Niki Christopoulou, Hugh McCaughan, Sophie Winterbourne, Davide Cazzola, Shichao Wang, Ulad Litvin, Salomé Brunon, Patrick Jb Harker, Iain McNae, Sander Granneman
pyRBDome: a comprehensive computational platform for enhancing RNA-binding proteome data. Life science alliance 7 (10) (2024)
Ross A Cordiner, Yuhui Dou, Rune Thomsen, Andrii Bugai, Sander Granneman, Torben Heick Jensen
Temporal-iCLIP captures co-transcriptional RNA-protein interactions. Nature communications 14 (1) (2023)
Ross A Cordiner, Yuhui Dou, Rune Thomsen, Andrii Bugai, Sander Granneman, Torben Heick Jensen
Temporal-iCLIP captures co-transcriptional RNA-protein interactions. Nature communications 14 (1) (2023)
Ross A Cordiner, Yuhui Dou, Rune Thomsen, Andrii Bugai, Sander Granneman, Torben Heick Jensen
Temporal-iCLIP captures co-transcriptional RNA-protein interactions. Nature communications 14 (1) (2023)
Ross A Cordiner, Yuhui Dou, Rune Thomsen, Andrii Bugai, Sander Granneman, Torben Heick Jensen
Temporal-iCLIP captures co-transcriptional RNA-protein interactions. Nature communications 14 (1) (2023)
Sofia Esteban Serna, Hugh McCaughan, Sander Granneman
Advantages and limitations of UV cross-linking analysis of protein-RNA interactomes in microbes. Molecular microbiology (2023)
Ross A Cordiner, Yuhui Dou, Rune Thomsen, Andrii Bugai, Sander Granneman, Torben Heick Jensen
Temporal-iCLIP captures co-transcriptional RNA-protein interactions. Nature communications 14 (1) (2023)
Ross A Cordiner, Yuhui Dou, Rune Thomsen, Andrii Bugai, Sander Granneman, Torben Heick Jensen
Temporal-iCLIP captures co-transcriptional RNA-protein interactions. Nature communications 14 (1) (2023)
Stuart William McKellar, Ivayla Ivanova, Pedro Arede, Rachel L Zapf, Noémie Mercier, Liang-Cui Chu, Daniel G Mediati, Amy C Pickering, Paul Briaud, Robert G Foster, Grzegorz Kudla, J Ross Fitzgerald, Isabelle Caldelari, Ronan E O'Carroll, Jai J Tree, Sander Granneman
RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression. Nature communications 13 (1) (2022)
Liang-Cui Chu, Pedro Arede, Wei Li, Erika C Urdaneta, Ivayla Ivanova, Stuart William McKellar, Jimi C Wills, Theresa Fröhlich, Alexander von Kriegsheim, Benedikt M Beckmann, Sander Granneman
The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins. Nature communications 13 (1) (2022)
Daniel G Mediati, Julia L Wong, Wei Gao, Stuart William McKellar, Chi Nam Ignatius Pang, Sylvania Wu, Winton Wu, Brandon M Sy, Ian R Monk, Joanna M Biazik, Marc R Wilkins, Benjamin Peter Howden, Timothy P Stinear, Sander Granneman, Jai J Tree
RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3'UTR required for intermediate vancomycin resistance. Nature communications 13 (1) (2022)
Daniel G Mediati, Julia L Wong, Wei Gao, Stuart William McKellar, Chi Nam Ignatius Pang, Sylvania Wu, Winton Wu, Brandon M Sy, Ian R Monk, Joanna M Biazik, Marc R Wilkins, Benjamin Peter Howden, Timothy P Stinear, Sander Granneman, Jai J Tree
Publisher Correction: RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3'UTR required for intermediate vancomycin resistance. Nature communications 13 (1) (2022)
Niki Christopoulou, Sander Granneman
The role of RNA-binding proteins in mediating adaptive responses in Gram-positive bacteria. The FEBS journal (2021)
Paolo Marangio, Ka Ying Toby Law, Guido Sanguinetti, Sander Granneman
diffBUM-HMM: a robust statistical modeling approach for detecting RNA flexibility changes in high-throughput structure probing data. Genome biology 22 (1) (2021)
Gonzalo Yebra, Andreas F Haag, Maan M Neamah, Bryan A Wee, Emily J Richardson, Pilar Horcajo, Sander Granneman, María Ángeles Tormo-Mas, Ricardo de la Fuente, J Ross Fitzgerald, José R Penadés
Radical genome remodelling accompanied the emergence of a novel host-restricted bacterial pathogen. PLoS pathogens 17 (5) (2021)
Ira Alexandra Iosub, Robert Willem van Nues, Stuart William McKellar, Karen Jule Nieken, Marta Marchioretto, Brandon Sy, Jai Justin Tree, Gabriella Viero, Sander Granneman
Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation. eLife 9 (2020)
Ira Alexandra Iosub, Marta Marchioretto, Rob W van Nues, Stuart William McKellar, Gabriella Viero, Sander Granneman
The mRNA derived MalH sRNA contributes to alternative carbon source utilization by tuning maltoporin expression in E. coli. RNA biology 18 (6) (2020)
Elena Burlacu, Fredrik Lackmann, Lisbeth-Carolina Aguilar, Sergey Belikov, Rob van Nues, Christian Trahan, Ralph D Hector, Nicholas Dominelli-Whiteley, Scott L Cockroft, Lars Wieslander, Marlene Oeffinger, Sander Granneman
High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast. Nature communications 8 (1) (2017)
Rob van Nues, Gabriele Schweikert, Erica de Leau, Alina Selega, Andrew Langford, Ryan Franklin, Ira Iosub, Peter Wadsworth, Guido Sanguinetti, Sander Granneman
Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress. Nature communications 8 (1) (2017)
Alina Selega, Christel Sirocchi, Ira Iosub, Sander Granneman, Guido Sanguinetti
Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments. Nature methods 14 (1) (2016)
Caroline Millet, Darya Ausiannikava, Thierry Le Bihan, Sander Granneman, Svetlana Makovets
Cell populations can use aneuploidy to survive telomerase insufficiency. Nature communications 6 (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Sander Granneman