Sheng Li

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 11

Top Topics

Convolutional Neural Network

Dna Methylation

Quality Control

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Science advances

Cancer discovery

This page only lists publications with an associated author ORCID identifier.

Publications

Yue Zhao, Dylan Agyemang, Yang Liu, Matt Mahoney, Sheng Li
Quantifying Interpretation Reproducibility in Vision Transformer Models with TAVAC. bioRxiv : the preprint server for biology (2024)
Yue Zhao, Dylan Agyemang, Yang Liu, Matt Mahoney, Sheng Li
Quantifying Interpretation Reproducibility in Vision Transformer Models with TAVAC. bioRxiv : the preprint server for biology (2024)
Yue Zhao, Dylan Agyemang, Yang Liu, Matt Mahoney, Sheng Li
Quantifying Interpretation Reproducibility in Vision Transformer Models with TAVAC. bioRxiv : the preprint server for biology (2024)
Matthew Antel, Romir Raj, Madona Y G Masoud, Ziwei Pan, Sheng Li, Barbara G Mellone, Mayu Inaba
Interchromosomal interaction of homologous Stat92E alleles regulates transcriptional switch during stem-cell differentiation. Nature communications 13 (1) (2022)
Yang Liu, Wojciech Rosikiewicz, Ziwei Pan, Nathaniel Jillette, Ping Wang, Aziz Taghbalout, Jonathan Foox, Christopher Mason, Martin Carroll, Albert Cheng, Sheng Li
DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation. Genome biology 22 (1) (2021)
Byoungkoo Lee, Jiahui Wang, Liuyang Cai, Minji Kim, Sandeep Namburi, Harianto Tjong, Yuliang Feng, Ping Wang, Zhonghui Tang, Ahmed Abbas, Chia-Lin Wei, Yijun Ruan, Sheng Li
ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization. Science advances 6 (28) (2020)
Sheng Li, Xiaowen Chen, Jiahui Wang, Cem Meydan, Jacob L Glass, Alan H Shih, Ruud Delwel, Ross L Levine, Christopher E Mason, Ari M Melnick
Somatic Mutations Drive Specific, but Reversible, Epigenetic Heterogeneity States in AML. Cancer discovery 10 (12) (2020)
Wojciech Rosikiewicz, Xiaowen Chen, Pilar M Dominguez, Hussein Ghamlouch, Said Aoufouchi, Olivier A Bernard, Ari M Melnick, Sheng Li
TET2 deficiency reprograms the germinal center B cell epigenome and silences genes linked to lymphomagenesis. Science advances 6 (25) (2020)
Menghan Du, Nathaniel Jillette, Jacqueline Jufen Zhu, Sheng Li, Albert Wu Cheng
CRISPR artificial splicing factors. Nature communications 11 (1) (2020)
Haitham Ashoor, Xiaowen Chen, Wojciech Rosikiewicz, Jiahui Wang, Albert Wu Cheng, Ping Wang, Yijun Ruan, Sheng Li
Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data. Nature communications 11 (1) (2020)
Pilar M Dominguez, Hussein Ghamlouch, Wojciech Rosikiewicz, Parveen Kumar, Wendy Béguelin, Lorena Fontán, Martín A Rivas, Patrycja Pawlikowska, Marine Armand, Enguerran Mouly, Miguel Torres-Martin, Ashley S Doane, Maria Teresa Calvo Fernandez, Matthew R Teater, Veronique Della-Valle, Luisa Cimmino, Nathalie Droin, Saber Tadros, Samaneh Motanagh, Alan H Shih, Mark A Rubin, Wayne Tam, Iannis Aifantis, Ross L Levine, Olivier Elemento, Giorgio Inghirami, Michael R Green, Maria E Figueroa, Olivier A Bernard, Said Aoufouchi, Sheng Li, Rita Shaknovich, Ari M Melnick
TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis. Cancer discovery 8 (12) (2018)