Shihoko Kojima

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 17

Top Topics

Gene Expression

Arabidopsis Thaliana

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

bioRxiv : the preprint server for biology

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Benjamin A Unruh, Douglas E Weidemann, Lin Miao, Shihoko Kojima
Coordination of rhythmic RNA synthesis and degradation orchestrates 24- and 12-h RNA expression patterns in mouse fibroblasts. Proceedings of the National Academy of Sciences of the United States of America 121 (7) (2024)
Benjamin A Unruh, Douglas E Weidemann, Lin Miao, Shihoko Kojima
Coordination of rhythmic RNA synthesis and degradation orchestrates 24- and 12-h RNA expression patterns in mouse fibroblasts. Proceedings of the National Academy of Sciences of the United States of America 121 (7) (2024)
Koichiro Uriu, Juan P Hernandez-Sanchez, Shihoko Kojima
Impacts of the feedback loop between sense-antisense RNAs in regulating circadian rhythms. bioRxiv : the preprint server for biology (2024)
Benjamin A Unruh, Douglas E Weidemann, Lin Miao, Shihoko Kojima
Coordination of rhythmic RNA synthesis and degradation orchestrates 24- and 12-h RNA expression patterns in mouse fibroblasts. Proceedings of the National Academy of Sciences of the United States of America 121 (7) (2024)
Benjamin A Unruh, Douglas E Weidemann, Lin Miao, Shihoko Kojima
Coordination of rhythmic RNA synthesis and degradation orchestrates 24- and 12-h RNA expression patterns in mouse fibroblasts. Proceedings of the National Academy of Sciences of the United States of America 121 (7) (2024)
Benjamin A Unruh, Douglas E Weidemann, Lin Miao, Shihoko Kojima
Coordination of rhythmic RNA synthesis and degradation orchestrates 24- and 12-h RNA expression patterns in mouse fibroblasts. Proceedings of the National Academy of Sciences of the United States of America 121 (7) (2024)
Benjamin A Unruh, Douglas E Weidemann, Lin Miao, Shihoko Kojima
Coordination of rhythmic RNA synthesis and degradation orchestrates 24- and 12-h RNA expression patterns in mouse fibroblasts. Proceedings of the National Academy of Sciences of the United States of America 121 (7) (2024)
Lin Miao, Douglas E Weidemann, Katherine Ngo, Benjamin A Unruh, Shihoko Kojima
A comparative study of algorithms detecting differential rhythmicity in transcriptomic data. bioRxiv : the preprint server for biology (2023)
Benjamin A Unruh, Douglas E Weidemann, Shihoko Kojima
Coordination of rhythmic RNA synthesis and degradation orchestrates 24-hour and 12-hour RNA expression patterns in mouse fibroblasts. bioRxiv : the preprint server for biology (2023)
Sherry B Hildreth, Evan S Littleton, Leor C Clark, Gabrielle C Puller, Shihoko Kojima, Brenda S J Winkel
Mutations that alter Arabidopsis flavonoid metabolism affect the circadian clock. The Plant journal : for cell and molecular biology 110 (4) (2022)
Lin Miao, Kyle R Batty, Ayana N Jackson, Heather A Pieno, Maisy W Rhoades, Shihoko Kojima
Genetic and environmental perturbations alter the rhythmic expression pattern of a circadian long non-coding RNA, Per2AS , in mouse liver. F1000Research 11 (2022)
Lin Miao, Kyle R Batty, Ayana N Jackson, Heather A Pieno, Maisy W Rhoades, Shihoko Kojima
Genetic and environmental perturbations alter the rhythmic expression pattern of a circadian long non-coding RNA, Per2AS , in mouse liver. F1000Research 11 (2022)
Rebecca A Mosig, Allison N Castaneda, Jacob C Deslauriers, Landon P Frazier, Kevin L He, Naseem Maghzian, Aarati Pokharel, Camille T Schrier, Lily Zhu, Nobuya Koike, John J Tyson, Carla B Green, Joseph S Takahashi, Shihoko Kojima
Natural antisense transcript of Period2, Per2AS, regulates the amplitude of the mouse circadian clock. Genes & development 35 (11-12) (2021)
Benjamin A Unruh, Shihoko Kojima
The Making and Breaking of RNAs: Dynamics of Rhythmic RNA Expression in Mammals. Journal of biological rhythms 35 (6) (2020)
Xiangyu Yao, Shihoko Kojima, Jing Chen
Critical role of deadenylation in regulating poly(A) rhythms and circadian gene expression. PLoS computational biology 16 (4) (2020)
Dorjsuren Battogtokh, Shihoko Kojima, John J Tyson
Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network. PLoS computational biology 14 (2) (2018)
Kerry L Gendreau, Benjamin A Unruh, Chuanli Zhou, Shihoko Kojima
Identification and Characterization of Transcripts Regulated by Circadian Alternative Polyadenylation in Mouse Liver. G3 (Bethesda, Md.) 8 (11) (2018)