Shuai Cheng Li (ShuaiCheng Li, Shuaicheng Li)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 30

Top Topics

Clostridium Difficile

Dna Methylation

Genome Wide Association Study

Top Venues

Nucleic acids research

Briefings in bioinformatics

Clinical and translational medicine

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Mengyao Wang, Shuai Cheng Li, Bai-Rong Shen
Elevated incidence of somatic mutations at prevalent genetic sites. Briefings in bioinformatics 25 (2) (2024)
Mengyao Wang, Shuai Cheng Li, Bai-Rong Shen
Elevated incidence of somatic mutations at prevalent genetic sites. Briefings in bioinformatics 25 (2) (2024)
Shuai Wang, Yiqi Jiang, Lijia Che, Ruo Han Wang, Shuai Cheng Li
Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome. Nucleic acids research (2024)
Mengyao Wang, Shuai Cheng Li, Bai-Rong Shen
Elevated incidence of somatic mutations at prevalent genetic sites. Briefings in bioinformatics 25 (2) (2024)
Shuai Wang, Yiqi Jiang, Lijia Che, Ruo Han Wang, Shuai Cheng Li
Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome. Nucleic acids research 52 (14) (2024)
Mengyao Wang, Shuai Cheng Li, Bai-Rong Shen
Elevated incidence of somatic mutations at prevalent genetic sites. Briefings in bioinformatics 25 (2) (2024)
Shuai Wang, Yiqi Jiang, Lijia Che, Ruo Han Wang, Shuai Cheng Li
Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome. Nucleic acids research 52 (14) (2024)
Yu Miao, Ziyan Shi, Wei Zhang, Lin Zhu, Shanshan Tang, Hongxi Chen, Xiaofei Wang, Qin Du, Shuai Cheng Li, Ying Zhang, Wenqin Luo, Xin Jin, Mingyan Fang, Hongyu Zhou
Immune Repertoire Profiling Reveals Its Clinical Application Potential and Triggers for Neuromyelitis Optica Spectrum Disorders. Neurology(R) neuroimmunology & neuroinflammation 10 (5) (2023)
Qian Zhou, Wenkui Dai, Yanmin Bao, Jing Chen, Xiaohua Han, Changshan Liu, Meijie Hou, Huisheng Yao, Changsuo Hao, Shuai Cheng Li, Yuejie Zheng
Baseline gut microbiome impacts probiotics Bacillus licheniformis CMCC63516 in modulating the gut microbiome and preventing antibiotic-associated diarrhea: A double-blind, randomized controlled trial. Clinical and translational medicine 13 (4) (2023)
Wei Zhang, Jia Ju, Yong Zhou, Teng Xiong, Mengyao Wang, Chaohui Li, Shixin Lu, Zefeng Lu, Liya Lin, Xiao Liu, Shuai Cheng Li
IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data. Briefings in bioinformatics (2023)
Wei Zhang, Jia Ju, Yong Zhou, Teng Xiong, Mengyao Wang, Chaohui Li, Shixin Lu, Zefeng Lu, Liya Lin, Xiao Liu, Shuai Cheng Li
IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data. Briefings in bioinformatics 24 (2) (2023)
Li Zhang, Lingxi Chen, Shuai Cheng Li, Mengyao Wang, Chaohui Li, Tingting Song, Yinyun Ni, Ying Yang, Zhiqiang Liu, Menglin Yao, Bai-Rong Shen, Weimin Li
Heterogeneity in lung cancers by single-cell DNA sequencing. Clinical and translational medicine 13 (9) (2023)
Ruo Han Wang, Shuo Yang, Zhixuan Liu, Yuanzheng Zhang, Xueying Wang, Zixin Xu, Jianping Wang, Shuai Cheng Li
PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations. Nucleic acids research (2023)
Ruo Han Wang, Jianping Wang, Shuai Cheng Li
Probabilistic tensor decomposition extracts better latent embeddings from single-cell multiomic data. Nucleic acids research (2023)
Wei Zhang, Jia Ju, Yong Zhou, Teng Xiong, Mengyao Wang, Chaohui Li, Shixin Lu, Zefeng Lu, Liya Lin, Xiao Liu, Shuai Cheng Li
IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data. Briefings in bioinformatics 24 (2) (2023)
Lingxi Chen, Shuai Cheng Li
Incorporating cell hierarchy to decipher the functional diversity of single cells. Nucleic acids research (2022)
Yu Wei Zhang, Lingxi Chen, Shuai Cheng Li
Detecting TAD-like domains from RNA-associated interactions. Nucleic acids research 50 (15) (2022)
Zhe Zhang, Shiying Li, Kun Wang, Zicheng Zhao, Heng Zhang, Shuai Cheng Li, Xiaofei Jiang
Whole-genome sequencing identifies novel candidate pathogenic variants associated with left ventricular non-compaction in a three-generation family. Clinical and translational medicine 11 (8) (2022)
Xueying Wang, Lingxi Chen, Wei Liu, Yuanzheng Zhang, Dawei Liu, Chenxin Zhou, Shuai Shi, Jiajie Dong, Zhengtao Lai, Bingran Zhao, Wenjingyu Zhang, Haoyue Cheng, Shuai Cheng Li
TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization. Nucleic acids research (2022)
Xiaoli Wang, Wenlong Jia, Mengyao Wang, Jihong Liu, Xianrong Zhou, Zhiqing Liang, Qinghua Zhang, Sixiang Long, Suolang Quzhen, XiangChun Li, Qiang Tian, Xiong Li, Haiying Sun, Caili Zhao, Silu Meng, Ruoqi Ning, Ling Xi, Lin Wang, Shasha Zhou, Jianwei Zhang, Li Wu, Yile Chen, Aijun Liu, Yaqi Ma, Xia Zhao, Xiaodong Cheng, Qing Zhang, Xiaobing Han, Huaxiong Pan, Yuan Zhang, Lili Cao, Yiqin Wang, Shaoping Ling, Lihua Cao, Hui Xing, Chang Xu, Long Sui, Shixuan Wang, Jian-Feng Zhou, Beihua Kong, Xing Xie, Gang Chen, Shuai Cheng Li, Ding Ma, Shuang Li
Human papillomavirus integration perspective in small cell cervical carcinoma. Nature communications 13 (1) (2022)
Wenlong Jia, Chang Xu, Shuai Cheng Li
Resolving complex structures at oncovirus integration loci with conjugate graph. Briefings in bioinformatics 22 (6) (2022)
Xianglilan Zhang, Ruo Han Wang, Xiangcheng Xie, Yunjia Hu, Jianping Wang, Qiang Sun, Xikang Feng, Wei Lin, Shanwei Tong, Wei Yan, Huiqi Wen, Mengyao Wang, Shixiang Zhai, Cheng Sun, Fangyi Wang, Qi Niu, Andrew M Kropinski, Yujun Cui, Xiaofang Jiang, Shaoliang Peng, Shuai Cheng Li, Yi-Gang Tong
Mining bacterial NGS data vastly expands the complete genomes of temperate phages. NAR genomics and bioinformatics 4 (3) (2022)
Jingwan Wang, Shiying Li, Lingxi Chen, Shuai Cheng Li
SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolution. NAR genomics and bioinformatics 4 (3) (2022)
Changfa Wang, Haijing Li, Yu Guo, Jinming Huang, Yan Sun, Jiumeng Min, Jinpeng Wang, Xiaodong Fang, Zicheng Zhao, Shuai Wang, Yanlin Zhang, Qingfeng Liu, Qiang Jiang, Xiuge Wang, Yijun Guo, Chunhong Yang, Yinchao Wang, Fang Tian, Guilong Zhuang, Yanna Fan, Qican Gao, Yuhua Li, Zhihua Ju, Jianbin Li, Rongling Li, Minghai Hou, Guiwen Yang, Guiqin Liu, Wenqiang Liu, Jiao Guo, Shanshan Pan, Guangyi Fan, Wei Zhang, Ruitao Zhang, Jie Yu, Xinhao Zhang, Qi Yin, Chuanliang Ji, Yuanchun Jin, Guidong Yue, Mei Liu, Jiake Xu, Shimin Liu, Jordi Jordana, Antonia Noce, Marcel Amills, Dong-Dong Wu, Shuai Cheng Li, Xiangshan Zhou, Jifeng Zhong
Author Correction: Donkey genomes provide new insights into domestication and selection for coat color. Nature communications 12 (1) (2021)
Yonghan Yu, Lingxi Chen, Xinyao Miao, Shuai Cheng Li
SpecHap: a diploid phasing algorithm based on spectral graph theory. Nucleic acids research 49 (19) (2021)
Yinhu Li, Li Shen, Congfu Huang, Xiaoyu Li, Junru Chen, Shuai Cheng Li, Bai-Rong Shen
Altered nitric oxide induced by gut microbiota reveals the connection between central precocious puberty and obesity. Clinical and translational medicine 11 (2) (2021)
Yalan Yang, Junyu Yan, Xinhao Fan, Jiaxing Chen, Zishuai Wang, Xiaoqin Liu, Guoqiang Yi, Yuwen Liu, Yongchao Niu, Longchao Zhang, Lixian Wang, Shuai Cheng Li, Kui Li, Zhonglin Tang
The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs. PLoS genetics 17 (11) (2021)
Yu Wei Zhang, Meng Bo Wang, Shuai Cheng Li
SuperTAD: robust detection of hierarchical topologically associated domains with optimized structural information. Genome biology 22 (1) (2021)
Changfa Wang, Haijing Li, Yu Guo, Jinming Huang, Yan Sun, Jiumeng Min, Jinpeng Wang, Xiaodong Fang, Zicheng Zhao, Shuai Wang, Yanlin Zhang, Qingfeng Liu, Qiang Jiang, Xiuge Wang, Yijun Guo, Chunhong Yang, Yinchao Wang, Fang Tian, Guilong Zhuang, Yanna Fan, Qican Gao, Yuhua Li, Zhihua Ju, Jianbin Li, Rongling Li, Minghai Hou, Guiwen Yang, Guiqin Liu, Wenqiang Liu, Jiao Guo, Shanshan Pan, Guangyi Fan, Wei Zhang, Ruitao Zhang, Jie Yu, Xinhao Zhang, Qi Yin, Chuanliang Ji, Yuanchun Jin, Guidong Yue, Mei Liu, Jiake Xu, Shimin Liu, Jordi Jordana, Antonia Noce, Marcel Amills, Dong-Dong Wu, Shuai Cheng Li, Xiangshan Zhou, Jifeng Zhong
Donkey genomes provide new insights into domestication and selection for coat color. Nature communications 11 (1) (2020)
Chen Li, Jiaxing Chen, Shuai Cheng Li
Understanding Horizontal Gene Transfer network in human gut microbiota. Gut pathogens 12 (2020)