Siddharth S Dey

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 11

Top Venues

Nature structural & molecular biology

bioRxiv : the preprint server for biology

Nature biotechnology

Nature protocols

University of California Santa Barbara

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Santa Barbara Jul 01 2016

United States

Assistant Professor

Publications

Alex Chialastri, Saumya Sarkar, Elizabeth E Schauer, Shyl Lamba, Siddharth S Dey
Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. Nature structural & molecular biology (2024)
Orlando Chirikian, Mohamed A Faynus, Markus Merk, Zachary Singh, Christopher Muray, Jeffrey Pham, Alex Chialastri, Alison Schroer Vander Roest, Alex Goldstein, Trevor Pyle, Kerry V Lane, Brock Roberts, Jacqueline E Smith, Ruwanthi N Gunawardane, Nathan J Sniadecki, David L Mack, Jennifer M Davis, Daniel Bernstein, Sebastian J Streichan, Dennis O Clegg, Siddharth S Dey, Maxwell Z Wilson, Beth L Pruitt
YAP dysregulation triggers hypertrophy by CCN2 secretion and TGFβ uptake in human pluripotent stem cell-derived cardiomyocytes. bioRxiv : the preprint server for biology (2024)
Alex Chialastri, Saumya Sarkar, Elizabeth E Schauer, Shyl Lamba, Siddharth S Dey
Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. Nature structural & molecular biology (2024)
Alex Chialastri, Saumya Sarkar, Elizabeth E Schauer, Shyl Lamba, Siddharth S Dey
Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. Nature structural & molecular biology 31 (8) (2024)
Alex Chialastri, Saumya Sarkar, Elizabeth E Schauer, Shyl Lamba, Siddharth S Dey
Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. bioRxiv : the preprint server for biology (2023)
Alex Chialastri, Saumya Sarkar, Elizabeth E Schauer, Shyl Lamba, Siddharth S Dey
Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. bioRxiv : the preprint server for biology (2023)
Maya Sen, Dylan Mooijman, Alex Chialastri, Jean-Charles Boisset, Mina Popovic, Björn Heindryckx, Susana M Chuva de Sousa Lopes, Siddharth S Dey, Alexander van Oudernaarden
Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development. Nature communications 12 (1) (2021)
Corina M Markodimitraki, Franka J Rang, Koos Rooijers, Sandra S de Vries, Alex Chialastri, Kim L de Luca, Silke J A Lochs, Dylan Mooijman, Siddharth S Dey, Jop Kind
Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq. Nature protocols 15 (6) (2020)
Chatarin Wangsanuwat, Kellie A Heom, Estella Liu, Michelle A O'Malley, Siddharth S Dey
Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion. BMC genomics 21 (1) (2020)
Jiwon Jang, Dasol Han, Mahdi Golkaram, Morgane Audouard, Guojing Liu, Daniel Bridges, Stefan Hellander, Alex Chialastri, Siddharth S Dey, Linda R Petzold, Kenneth S Kosik
Control over single-cell distribution of G1 lengths by WNT governs pluripotency. PLoS biology 17 (9) (2019)
Koos Rooijers, Corina M Markodimitraki, Franka J Rang, Sandra S de Vries, Alex Chialastri, Kim L de Luca, Dylan Mooijman, Siddharth S Dey, Jop Kind
Simultaneous quantification of protein-DNA contacts and transcriptomes in single cells. Nature biotechnology 37 (7) (2019)

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Publication Activity (10 Years)

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Siddharth S Dey