BMC genomics

Keyphrases

Publications

volume 25, number 1, 2024

Qian Xu, Beiwen Zheng, Kaixuan Li, Ping Shen, Yonghong Xiao
A preliminary exploration on the mechanism of the carbapenem-resistance transformation of Serratia marcescens in vivo. BMC genomics 25 (1) (2024)
Anton Frisgaard Nørrevang, Sergey Shabala, Michael Palmgren
A two-sequence motif-based method for the inventory of gene families in fragmented and poorly annotated genome sequences. BMC genomics 25 (1) (2024)
Changfu Jia, Qiang Lai, Yiman Zhu, Jiajun Feng, Xuming Dan, Yulin Zhang, Zhiqin Long, Jiali Wu, Zeng Wang, Xiner Qumu, Rui Wang, Jing Wang
Intergrative metabolomic and transcriptomic analyses reveal the potential regulatory mechanism of unique dihydroxy fatty acid biosynthesis in the seeds of an industrial oilseed crop Orychophragmus violaceus. BMC genomics 25 (1) (2024)
Chaoqun Chen, Yao Zhang, Yuanfei Chen, Hongxu Chen, Ronggao Gong
Sweet cherry TCP gene family analysis reveals potential functions of PavTCP1, PavTCP2 and PavTCP3 in fruit light responses. BMC genomics 25 (1) (2024)
Xuan Liu, Xinran Wang, Fan Zhou, Yarong Xue, Changhong Liu
Genomic insights into Penicillium chrysogenum adaptation to subseafloor sedimentary environments. BMC genomics 25 (1) (2024)
Qian Zhang, Jianming Chen, Wei Wang, Jingyu Lin, Jiabao Guo
Genome-wide investigation of the TGF-β superfamily in scallops. BMC genomics 25 (1) (2024)
Lanlan Li, Jinqiang Quan, Hongyi Liu, Haibo Yu, Hongyan Chen, Changyou Xia, Shengguo Zhao, Caixia Gao
Identification of the genetic characteristics of copy number variations in experimental specific pathogen-free ducks using whole-genome resequencing. BMC genomics 25 (1) (2024)
Aftab Ahmad, Carol von Dohlen, Zhumei Ren
A chromosome-level genome assembly of the Rhus gall aphid Schlechtendalia chinensis provides insight into the endogenization of Parvovirus-like DNA sequences. BMC genomics 25 (1) (2024)
Abdelhameed Elameen, Simo N Maduna, Melissa H Mageroy, André van Eerde, Geir Knudsen, Snorre B Hagen, Hans Geir Eiken
Novel insight into lepidopteran phylogenetics from the mitochondrial genome of the apple fruit moth of the family Argyresthiidae. BMC genomics 25 (1) (2024)
Ruiqi Wang, Chaofan Du, Gang Gu, Binghui Zhang, Xiaolu Lin, Chengliang Chen, Tong Li, Rui Chen, Xiaofang Xie
Genome-wide identification and expression analysis of the ADH gene family under diverse stresses in tobacco (Nicotiana tabacum L.). BMC genomics 25 (1) (2024)
Dennis Svedberg, Rahel R Winiger, Alexandra Berg, Himanshu Sharma, Christian Tellgren-Roth, Bettina A Debrunner-Vossbrinck, Charles R Vossbrinck, Eilika Weber-Ban
Functional annotation of a divergent genome using sequence and structure-based similarity. BMC genomics 25 (1) (2024)
Zhong Xu, Junjing Wu, Yu Zhang, Mu Qiao, Jiawei Zhou, Yue Feng, Zipeng Li, Hua Sun, Ruiyi Lin, Zhongxu Song, Haizhong Zhao, Lianghua Li, Nanqi Chen, Yujie Li, Favour Oluwapelumi Oyelami, Xianwen Peng, Shuqi Mei
Genome-wide detection of selection signatures in Jianli pigs reveals novel cis-regulatory haplotype in EDNRB associated with two-end black coat color. BMC genomics 25 (1) (2024)
Zhen Liu, Lei Wang, Yuanming Li, Jinyong Zhu, Zhitao Li, Limin Chen, Hongyang Li, Tianbin Shi, Panfeng Yao, Zhenzhen Bi, Chao Sun, Jiangping Bai, Junlian Zhang, Yuhui Liu
Genome-wide analysis of the U-box E3 ligases gene family in potato (Solanum tuberosum L.) and overexpress StPUB25 enhance drought tolerance in transgenic Arabidopsis. BMC genomics 25 (1) (2024)
Bangtai Wang, Meili Yang, Hua Guo, Jing Wang, Zhihong Wang, Hongwei Lu, Guiwen Qin, Jiafa Chen
Genome-wide association study for stalk lodging resistance related traits in maize (Zea mays L.). BMC genomics 25 (1) (2024)
Agata Leońska-Duniec, Małgorzata Borczyk, Michał Korostyński, Myosotis Massidda, Ewelina Maculewicz, Paweł Cięszczyk
Correction: Genetic variants in myostatin and its receptors promote elite athlete status. BMC genomics 25 (1) (2024)
Abdelhameed Elameen, Simo N Maduna, Melissa H Mageroy, André van Eerde, Geir Knudsen, Snorre B Hagen, Hans Geir Eiken
Novel insight into lepidopteran phylogenetics from the mitochondrial genome of the apple fruit moth of the family Argyresthiidae. BMC genomics 25 (1) (2024)
Furui Liu, Fangyuan Shi, Zhenhua Yu
Inferring single-cell copy number profiles through cross-cell segmentation of read counts. BMC genomics 25 (1) (2024)
Dennis Svedberg, Rahel R Winiger, Alexandra Berg, Himanshu Sharma, Christian Tellgren-Roth, Bettina A Debrunner-Vossbrinck, Charles R Vossbrinck, Eilika Weber-Ban
Functional annotation of a divergent genome using sequence and structure-based similarity. BMC genomics 25 (1) (2024)
Zhihao Zhao, Qilin Wang, Fang Zhao, Junnan Ma, Xue Sui, Hyok Chol Choe, Peng Chen, Xue Gao, Lin Zhang
Single-cell and transcriptomic analyses reveal the influence of diabetes on ovarian cancer. BMC genomics 25 (1) (2024)
Leilei Yang, Chengfeng Fang, Ruili Zhang, Shenkang Zhou
Prognostic value of oxidative stress-related genes in colorectal cancer and its correlation with tumor immunity. BMC genomics 25 (1) (2024)
Qian Xu, Beiwen Zheng, Kaixuan Li, Ping Shen, Yonghong Xiao
A preliminary exploration on the mechanism of the carbapenem-resistance transformation of Serratia marcescens in vivo. BMC genomics 25 (1) (2024)
Ruiqi Wang, Chaofan Du, Gang Gu, Binghui Zhang, Xiaolu Lin, Chengliang Chen, Tong Li, Rui Chen, Xiaofang Xie
Genome-wide identification and expression analysis of the ADH gene family under diverse stresses in tobacco (Nicotiana tabacum L.). BMC genomics 25 (1) (2024)
Furui Liu, Fangyuan Shi, Zhenhua Yu
Inferring single-cell copy number profiles through cross-cell segmentation of read counts. BMC genomics 25 (1) (2024)
Leilei Yang, Chengfeng Fang, Ruili Zhang, Shenkang Zhou
Prognostic value of oxidative stress-related genes in colorectal cancer and its correlation with tumor immunity. BMC genomics 25 (1) (2024)
Tianzhen Cui, Shoujian Zang, Xinlu Sun, Jing Zhang, Yachun Su, Dongjiao Wang, Guran Wu, Ruiqi Chen, Youxiong Que, Qing Lin, Chuihuai You
Molecular identification and functional characterization of a transcription factor GeRAV1 from Gelsemium elegans. BMC genomics 25 (1) (2024)
Leiming Dong, Yunhui Xie, Yalin Zhang, Ruizhen Wang, Xiaomei Sun
Genomic dissection of additive and non-additive genetic effects and genomic prediction in an open-pollinated family test of Japanese larch. BMC genomics 25 (1) (2024)
Zaicheng Zhang, Chaojun Peng, Weigang Xu, Yan Li, Xueli Qi, Mingzhong Zhao
Genome-wide association study of agronomic traits related to nitrogen use efficiency in Henan wheat. BMC genomics 25 (1) (2024)
Zhihao Zhao, Qilin Wang, Fang Zhao, Junnan Ma, Xue Sui, Hyok Chol Choe, Peng Chen, Xue Gao, Lin Zhang
Single-cell and transcriptomic analyses reveal the influence of diabetes on ovarian cancer. BMC genomics 25 (1) (2024)
Dae Gyu Choi, Ju Hye Baek, Dong Min Han, Shehzad Abid Khan, Che Ok Jeon
Comparative pangenome analysis of Enterococcus faecium and Enterococcus lactis provides new insights into the adaptive evolution by horizontal gene acquisitions. BMC genomics 25 (1) (2024)
Kedra M Ousmael, Eduardo P Cappa, Jon K Hansen, Prasad Hendre, Ole K Hansen
Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species. BMC genomics 25 (1) (2024)
Ling Zhu, Tuo Yin, Mengjie Zhang, Xiuyao Yang, Jiexin Wu, Hanbing Cai, Na Yang, Xulin Li, Ke Wen, Daming Chen, Hanyao Zhang, Xiaozhen Liu
Genome-wide identification and expression pattern analysis of the kiwifruit GRAS transcription factor family in response to salt stress. BMC genomics 25 (1) (2024)
Felipe André Oliveira Freitas, Luiz F Brito, Simara Larissa Fanalli, Janaína Lustosa Gonçales, Bruna Pereira Martins da Silva, Mariah Castro Durval, Fernanda Nery Ciconello, Camila Sabino de Oliveira, Lucas Echevarria Nascimento, Izally Carvalho Gervásio, Julia Dezen Gomes, Gabriel Costa Monteiro Moreira, Bárbara Silva-Vignato, Luiz Lehmann Coutinho, Vivian Vezzoni de Almeida, Aline Silva Mello Cesar
Identification of eQTLs using different sets of single nucleotide polymorphisms associated with carcass and body composition traits in pigs. BMC genomics 25 (1) (2024)
Haiming Kong, Jiaxing Song, Shihai Ma, Jing Yang, Zitong Shao, Qian Li, Zhongxing Li, Zhiguo Xie, Peizhi Yang, Yuman Cao
Genome-wide identification and expression analysis of the glycosyl hydrolase family 1 genes in Medicago sativa revealed their potential roles in response to multiple abiotic stresses. BMC genomics 25 (1) (2024)
Shugao Fan, Xiao Xu, Jianmin Chen, Yanling Yin, Ying Zhao
Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa. BMC genomics 25 (1) (2024)
Jay K Goldberg, Aaron Olcerst, Michael McKibben, J Daniel Hare, Michael S Barker, Judith L Bronstein
A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response. BMC genomics 25 (1) (2024)
Nicholas Dopkins, Bhavya Singh, Stephanie Michael, Panpan Zhang, Jez L Marston, Tongyi Fei, Manvendra Singh, Cedric Feschotte, Nicholas Collins, Matthew L Bendall, Douglas F Nixon
Ribosomal profiling of human endogenous retroviruses in healthy tissues. BMC genomics 25 (1) (2024)
Kedra M Ousmael, Eduardo P Cappa, Jon K Hansen, Prasad Hendre, Ole K Hansen
Genomic evaluation for breeding and genetic management in Cordia africana, a multipurpose tropical tree species. BMC genomics 25 (1) (2024)
Lanlan Li, Jinqiang Quan, Hongyi Liu, Haibo Yu, Hongyan Chen, Changyou Xia, Shengguo Zhao, Caixia Gao
Identification of the genetic characteristics of copy number variations in experimental specific pathogen-free ducks using whole-genome resequencing. BMC genomics 25 (1) (2024)
Tianzhen Cui, Shoujian Zang, Xinlu Sun, Jing Zhang, Yachun Su, Dongjiao Wang, Guran Wu, Ruiqi Chen, Youxiong Que, Qing Lin, Chuihuai You
Molecular identification and functional characterization of a transcription factor GeRAV1 from Gelsemium elegans. BMC genomics 25 (1) (2024)
Aftab Ahmad, Carol von Dohlen, Zhumei Ren
A chromosome-level genome assembly of the Rhus gall aphid Schlechtendalia chinensis provides insight into the endogenization of Parvovirus-like DNA sequences. BMC genomics 25 (1) (2024)
Qian Xu, Beiwen Zheng, Kaixuan Li, Ping Shen, Yonghong Xiao
A preliminary exploration on the mechanism of the carbapenem-resistance transformation of Serratia marcescens in vivo. BMC genomics 25 (1) (2024)
Abdelhameed Elameen, Simo N Maduna, Melissa H Mageroy, André van Eerde, Geir Knudsen, Snorre B Hagen, Hans Geir Eiken
Novel insight into lepidopteran phylogenetics from the mitochondrial genome of the apple fruit moth of the family Argyresthiidae. BMC genomics 25 (1) (2024)
Dennis Svedberg, Rahel R Winiger, Alexandra Berg, Himanshu Sharma, Christian Tellgren-Roth, Bettina A Debrunner-Vossbrinck, Charles R Vossbrinck, Eilika Weber-Ban
Functional annotation of a divergent genome using sequence and structure-based similarity. BMC genomics 25 (1) (2024)
Ruiqi Wang, Chaofan Du, Gang Gu, Binghui Zhang, Xiaolu Lin, Chengliang Chen, Tong Li, Rui Chen, Xiaofang Xie
Genome-wide identification and expression analysis of the ADH gene family under diverse stresses in tobacco (Nicotiana tabacum L.). BMC genomics 25 (1) (2024)

volume 25, number Suppl 1, 2024

Chang Lu, Jiuhong Jiang, Qiufen Chen, Huanhuan Liu, Xingda Ju, Han Wang
Analysis and prediction of interactions between transmembrane and non-transmembrane proteins. BMC genomics 25 (Suppl 1) (2024)
Chang Lu, Jiuhong Jiang, Qiufen Chen, Huanhuan Liu, Xingda Ju, Han Wang
Analysis and prediction of interactions between transmembrane and non-transmembrane proteins. BMC genomics 25 (Suppl 1) (2024)

volume 25, number Suppl 3, 2024

Tzu-Chieh Lin, Cheng-Hung Tsai, Cheng-Kai Shiau, Jia-Hsin Huang, Huai-Kuang Tsai
Predicting splicing patterns from the transcription factor binding sites in the promoter with deep learning. BMC genomics 25 (Suppl 3) (2024)
Tzu-Chieh Lin, Cheng-Hung Tsai, Cheng-Kai Shiau, Jia-Hsin Huang, Huai-Kuang Tsai
Predicting splicing patterns from the transcription factor binding sites in the promoter with deep learning. BMC genomics 25 (Suppl 3) (2024)
Tetsushi Yada, Takeaki Taniguchi
A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage. BMC genomics 25 (Suppl 3) (2024)
Stefano Perna, Pietro Pinoli, Stefano Ceri, Limsoon Wong
A comparative analysis of ENCODE and Cistrome in the context of TF binding signal. BMC genomics 25 (Suppl 3) (2024)