Siqin Cao

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 16

Top Topics

Human Immunodeficiency Virus

Molecular Dynamics

Top Venues

The Journal of chemical physics

Proceedings of the National Academy of Sciences of the United States of America

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Yue Wu, Siqin Cao, Yunrui Qiu, Xuhui Huang
Tutorial on how to build non-Markovian dynamic models from molecular dynamics simulations for studying protein conformational changes. The Journal of chemical physics 160 (12) (2024)
Ilona C Unarta, Siqin Cao, Eshani C Goonetilleke, Jiani Niu, Samuel H Gellman, Xuhui Huang
Submillisecond Atomistic Molecular Dynamics Simulations Reveal Hydrogen Bond-Driven Diffusion of a Guest Peptide in Protein-RNA Condensate. The journal of physical chemistry. B 128 (10) (2024)
Yue Wu, Siqin Cao, Yunrui Qiu, Xuhui Huang
Tutorial on how to build non-Markovian dynamic models from molecular dynamics simulations for studying protein conformational changes. The Journal of chemical physics 160 (12) (2024)
Ilona C Unarta, Siqin Cao, Eshani C Goonetilleke, Jiani Niu, Samuel H Gellman, Xuhui Huang
Submillisecond Atomistic Molecular Dynamics Simulations Reveal Hydrogen Bond-Driven Diffusion of a Guest Peptide in Protein-RNA Condensate. The journal of physical chemistry. B 128 (10) (2024)
Ilona C Unarta, Siqin Cao, Eshani C Goonetilleke, Jiani Niu, Samuel H Gellman, Xuhui Huang
Submillisecond Atomistic Molecular Dynamics Simulations Reveal Hydrogen Bond-Driven Diffusion of a Guest Peptide in Protein-RNA Condensate. The journal of physical chemistry. B (2024)
Ilona C Unarta, Siqin Cao, Eshani C Goonetilleke, Jiani Niu, Samuel H Gellman, Xuhui Huang
Submillisecond Atomistic Molecular Dynamics Simulations Reveal Hydrogen Bond-Driven Diffusion of a Guest Peptide in Protein-RNA Condensate. The journal of physical chemistry. B 128 (10) (2024)
Yue Wu, Siqin Cao, Yunrui Qiu, Xuhui Huang
Tutorial on how to build non-Markovian dynamic models from molecular dynamics simulations for studying protein conformational changes. The Journal of chemical physics 160 (12) (2024)
Ilona C Unarta, Siqin Cao, Eshani C Goonetilleke, Jiani Niu, Samuel H Gellman, Xuhui Huang
Submillisecond Atomistic Molecular Dynamics Simulations Reveal Hydrogen Bond-Driven Diffusion of a Guest Peptide in Protein-RNA Condensate. The journal of physical chemistry. B 128 (10) (2024)
Anthony J Dominic, Thomas Sayer, Siqin Cao, Thomas E Markland, Xuhui Huang, Andrés Montoya-Castillo
Building insightful, memory-enriched models to capture long-time biochemical processes from short-time simulations. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Siqin Cao, Yunrui Qiu, Michael L Kalin, Xuhui Huang
Integrative generalized master equation: A method to study long-timescale biomolecular dynamics via the integrals of memory kernels. The Journal of chemical physics 159 (13) (2023)
Anthony J Dominic, Thomas Sayer, Siqin Cao, Thomas E Markland, Xuhui Huang, Andrés Montoya-Castillo
Building insightful, memory-enriched models to capture long-time biochemical processes from short-time simulations. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Anthony J Dominic, Thomas Sayer, Siqin Cao, Thomas E Markland, Xuhui Huang, Andrés Montoya-Castillo
Building insightful, memory-enriched models to capture long-time biochemical processes from short-time simulations. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Xiao-Yan Zheng, Michael Ho-Yeung Chan, Alan Kwun-Wa Chan, Siqin Cao, Maggie Ng, Fu Kit Sheong, Chu Li, Eshani Chrisana Goonetilleke, William Wai Yan Lam, Tai-Chu Lau, Xuhui Huang, Vivian Wing-Wah Yam
Elucidation of the key role of Pt···Pt interactions in the directional self-assembly of platinum(II) complexes. Proceedings of the National Academy of Sciences of the United States of America 119 (12) (2022)
Ilona Christy Unarta, Siqin Cao, Shintaroh Kubo, Wei Wang, Peter Pak-Hang Cheung, Xin Gao, Shoji Takada, Xuhui Huang
Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model. Proceedings of the National Academy of Sciences of the United States of America 118 (17) (2021)
Siqin Cao, Andrés Montoya-Castillo, Wei Wang, Thomas E Markland, Xuhui Huang
On the advantages of exploiting memory in Markov state models for biomolecular dynamics. The Journal of chemical physics 153 (1) (2021)
Lizhe Zhu, Fu Kit Sheong, Siqin Cao, Song Liu, Ilona C Unarta, Xuhui Huang
TAPS: A traveling-salesman based automated path searching method for functional conformational changes of biological macromolecules. The Journal of chemical physics 150 (12) (2019)