Stephen R Piccolo (Stephen Piccolo)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 24

Top Topics

Metastatic Breast Cancer

Electronic Health Record

Dna Methylation

Top Venues

Biomarkers in medicine

Molecular cancer research : MCR

Database : the journal of biological databases and curation

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Harlan P Stevens, Carly V Winegar, Arwen F Oakley, Stephen R Piccolo
Identifying images in the biology literature that are problematic for people with a color-vision deficiency. eLife 13 (2024)
Jie Kawakami, Stephen R Piccolo, John S K Kauwe, Steven W Graves
Gender differences contribute to variability of serum lipid biomarkers for Alzheimer's disease. Biomarkers in medicine 16 (15) (2023)
Jie Kawakami, Stephen R Piccolo, John S K Kauwe, Steven W Graves
Gender differences contribute to variability of serum lipid biomarkers for Alzheimer's disease. Biomarkers in medicine 16 (15) (2023)
Jie Kawakami, Stephen R Piccolo, John S K Kauwe, Steven W Graves
Gender differences contribute to variability of serum lipid biomarkers for Alzheimer's disease. Biomarkers in medicine 16 (15) (2023)
Avery Mecham, Ashlie Stephenson, Badi I Quinteros, Grace S Brown, Stephen R Piccolo
TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus. Journal of integrative bioinformatics (2023)
Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R Piccolo, Peijin Han, V G Vinod Vydiswaran, Ramya Tekumalla, Juan M Banda, Parsa Bagherzadeh, Sabine Bergler, João F Silva, Tiago Almeida, Paloma Martínez, Renzo M Rivera-Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
Automatic Extraction of Medication Mentions from Tweets-Overview of the BioCreative VII Shared Task 3 Competition. Database : the journal of biological databases and curation 2023 (2023)
Jie Kawakami, Stephen R Piccolo, John S K Kauwe, Steven W Graves
Gender differences contribute to variability of serum lipid biomarkers for Alzheimer's disease. Biomarkers in medicine 16 (15) (2023)
Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R Piccolo, Peijin Han, V G Vinod Vydiswaran, Ramya Tekumalla, Juan M Banda, Parsa Bagherzadeh, Sabine Bergler, João F Silva, Tiago Almeida, Paloma Martínez, Renzo M Rivera-Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
Automatic Extraction of Medication Mentions from Tweets-Overview of the BioCreative VII Shared Task 3 Competition. Database : the journal of biological databases and curation 2023 (2023)
Eranga Roshan Balasooriya, Deshan Madhusanka, Tania P Lopez-Palacios, Riley J Eastmond, Dasun Jayatunge, Jake J Owen, Jack S Gashler, Christina M Egbert, Chanaka Bulathsinghalage, Lu Liu, Stephen R Piccolo, Joshua L Andersen
Integrating Clinical Cancer and PTM Proteomics Data Identifies a Mechanism of ACK1 Kinase Activation. Molecular cancer research : MCR (2023)
Stephen R Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H Payne, Perry G Ridge
Evaluating a large language model's ability to solve programming exercises from an introductory bioinformatics course. PLoS computational biology 19 (9) (2023)
Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R Piccolo, Peijin Han, V G Vinod Vydiswaran, Ramya Tekumalla, Juan M Banda, Parsa Bagherzadeh, Sabine Bergler, João F Silva, Tiago Almeida, Paloma Martínez, Renzo M Rivera-Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
Automatic Extraction of Medication Mentions from Tweets-Overview of the BioCreative VII Shared Task 3 Competition. Database : the journal of biological databases and curation 2023 (2023)
Jie Kawakami, Stephen R Piccolo, John S K Kauwe, Steven W Graves
Gender differences contribute to variability of serum lipid biomarkers for Alzheimer's disease. Biomarkers in medicine (2023)
Stephen R Piccolo, Avery Mecham, Nathan P Golightly, Jérémie L Johnson, Dustin B Miller
The ability to classify patients based on gene-expression data varies by algorithm and performance metric. PLoS computational biology 18 (3) (2022)
Alyssa C Parker, Badí I Quinteros, Stephen R Piccolo
The DNA methylation landscape of five pediatric-tumor types. PeerJ 10 (2022)
Stephen R Piccolo, Zachary E Ence, Elizabeth C Anderson, Jeffrey T Chang, Andrea H Bild
Simplifying the development of portable, scalable, and reproducible workflows. eLife 10 (2021)
Dustin B Miller, Stephen R Piccolo
trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios. BMC bioinformatics 22 (1) (2021)
Katie L Pennington, Colten M McEwan, James C Woods, Colin M Muir, A G Pramoda Sahankumari, Riley Eastmond, Eranga Roshan Balasooriya, Christina M Egbert, Sandeep Kaur, Tyler Heaton, Katherine K McCormack, Stephen R Piccolo, Manabu Kurokawa, Joshua L Andersen
SGK2, 14-3-3, and HUWE1 Cooperate to Control the Localization, Stability, and Function of the Oncoprotein PTOV1. Molecular cancer research : MCR (2021)
Ifeanyichukwu O Nwosu, Stephen R Piccolo
A systematic review of datasets that can help elucidate relationships among gene expression, race, and immunohistochemistry-defined subtypes in breast cancer. Cancer biology & therapy 22 (7-9) (2021)
G Rex Sumsion, Michael S Bradshaw, Jeremy T Beales, Emi Ford, Griffin R G Caryotakis, Daniel J Garrett, Emily D LeBaron, Ifeanyichukwu O Nwosu, Stephen R Piccolo
Diverse approaches to predicting drug-induced liver injury using gene-expression profiles. Biology direct 15 (1) (2020)
Weston R Bodily, Brian H Shirts, Tom Walsh, Suleyman Gulsuner, Mary-Claire King, Alyssa Parker, Moom Roosan, Stephen R Piccolo
Effects of germline and somatic events in candidate BRCA-like genes on breast-tumor signatures. PloS one 15 (9) (2020)
Babita Singh, Juan L Trincado, P J Tatlow, Stephen R Piccolo, Eduardo Eyras
Genome Sequencing and RNA-Motif Analysis Reveal Novel Damaging Noncoding Mutations in Human Tumors. Molecular cancer research : MCR 16 (7) (2018)
Nathan P Golightly, Avery Bell, Anna I Bischoff, Parker D Hollingsworth, Stephen R Piccolo
Curated compendium of human transcriptional biomarker data. Scientific data 5 (2018)
Hamid Bolouri, Jason E Farrar, Timothy Triche, Rhonda E Ries, Emilia L Lim, Todd A Alonzo, Yussanne Ma, Richard Moore, Andrew J Mungall, Marco A Marra, Jinghui Zhang, Xiaotu Ma, Yu Liu, Yanling Liu, Jaime M Guidry Auvil, Tanja M Davidsen, Patee Gesuwan, Leandro C Hermida, Bodour Salhia, Stephen Capone, Giridharan Ramsingh, Christian Michel Zwaan, Sanne Noort, Stephen R Piccolo, E Anders Kolb, Alan S Gamis, Malcolm A Smith, Daniela S Gerhard, Soheil Meshinchi
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions. Nature medicine 24 (1) (2017)
Samuel L Brady, Jasmine A McQuerry, Yi Qiao, Stephen R Piccolo, Gajendra Shrestha, David F Jenkins, Ryan M Layer, Brent S Pedersen, Ryan H Miller, Amanda Esch, Sara R Selitsky, Joel S Parker, Layla A Anderson, Brian K Dalley, Rachel E Factor, Chakravarthy B Reddy, Jonathan P Boltax, Dean Y Li, Philip J Moos, Joe W Gray, Laura M Heiser, Saundra S Buys, Adam L Cohen, W Evan Johnson, Aaron R Quinlan, Gabor Marth, Theresa L Werner, Andrea H Bild
Combating subclonal evolution of resistant cancer phenotypes. Nature communications 8 (1) (2017)