Sündüz Keleş (Sunduz Keles, Sunduz Kelles)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 25

Top Topics

Binding Protein

Autism Spectrum Disorder

Genome Wide Association Study

Top Venues

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Jingqi Duan, Audrey P Gasch, Sündüz Keleş
Integrative annotation scores of variants for impact on RNA binding protein activities. Bioinformatics (Oxford, England) 40 (4) (2024)
Jingqi Duan, Audrey P Gasch, Sündüz Keleş
Integrative annotation scores of variants for impact on RNA binding protein activities. Bioinformatics (Oxford, England) 40 (4) (2024)
Kwangdeok Shin, Anjelica Rodriguez-Parks, Yu Xia, Chenyang Dong, Sündüz Keleş, Yingxi Cao, Junsu Kang
Harnessing the regenerative potential of interleukin11 to enhance heart repair. bioRxiv : the preprint server for biology (2024)
Kwangdeok Shin, Anjelica Rodriguez-Parks, Yu Xia, Chenyang Dong, Sündüz Keleş, Yingxi Cao, Junsu Kang
Harnessing the regenerative potential of interleukin11 to enhance heart repair. bioRxiv : the preprint server for biology (2024)
Kwangmoon Park, Sündüz Keleş
Joint tensor modeling of single cell 3D genome and epigenetic data with Muscle. bioRxiv : the preprint server for biology (2023)
Shan Lu, Sündüz Keleş
Dozer: Debiased personalized gene co-expression networks for population-scale scRNA-seq data. bioRxiv : the preprint server for biology (2023)
Kwangmoon Park, Sündüz Keleş
Joint tensor modeling of single cell 3D genome and epigenetic data with Muscle. bioRxiv : the preprint server for biology (2023)
Kwangmoon Park, Sündüz Keleş
Joint tensor modeling of single cell 3D genome and epigenetic data with Muscle. bioRxiv : the preprint server for biology (2023)
Shan Lu, Sündüz Keleş
Debiased personalized gene coexpression networks for population-scale scRNA-seq data. Genome research (2023)
Kwangmoon Park, Sündüz Keleş
Joint tensor modeling of single cell 3D genome and epigenetic data with Muscle. bioRxiv : the preprint server for biology (2023)
Mehmet F Keles, Ali Osman Berk Şapcı, Casey Brody, Isabelle Palmer, Christin Le, Oznur Tastan, Sündüz Keleş, Mark N Wu
Deep Phenotyping of Sleep in Drosophila . bioRxiv : the preprint server for biology (2023)
Shan Lu, Sündüz Keleş
Dozer: Debiased personalized gene co-expression networks for population-scale scRNA-seq data. bioRxiv : the preprint server for biology (2023)
Shan Lu, Sündüz Keleş
Dozer: Debiased personalized gene co-expression networks for population-scale scRNA-seq data. bioRxiv : the preprint server for biology (2023)
Brandon A Thompson, Shan Lu, Julio Revilla, Md Jashim Uddin, David N Oakland, Savannah Grace Brovero, Sündüz Keleş, Emery H Bresnick, William A Petri, Stacey L Burgess
Secondary bile acids function through the vitamin D receptor in myeloid progenitors to promote myelopoiesis. Blood advances (2023)
Siqi Shen, Ye Zheng, Sündüz Keleş
scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data. Bioinformatics (Oxford, England) 38 (14) (2022)
Ye Zheng, Siqi Shen, Sündüz Keleş
Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D. Genome biology 23 (1) (2022)
Ligia A Papale, Andy Madrid, Qi Zhang, Kailei Chen, Lara Sak, Sündüz Keleş, Reid S Alisch
Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders. Genome research 32 (2) (2021)
Kunling Huang, Yuchang Wu, Junha Shin, Ye Zheng, Alireza Fotuhi Siahpirani, Yupei Lin, Zheng Ni, Jiawen Chen, Jing You, Sündüz Keleş, Daifeng Wang, Sushmita Roy, Qiongshi Lu
Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder. PLoS genetics 17 (2) (2021)
Shan Lu, Daniel J Conn, Shuyang Chen, Kirby D Johnson, Emery H Bresnick, Sündüz Keleş
MLG: multilayer graph clustering for multi-condition scRNA-seq data. Nucleic acids research (2021)
Chenyang Dong, Shane P Simonett, Sunyoung Shin, Donnie S Stapleton, Kathryn L Schueler, Gary A Churchill, Leina Lu, Xiaoxiao Liu, Fulai Jin, Yan Li, Alan D Attie, Mark P Keller, Sündüz Keleş
INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants. Genome biology 22 (1) (2021)
Fan Chen, Sündüz Keleş
SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins. Genome biology 21 (1) (2020)
Nicole M Zwifelhofer, Xiaoli Cai, Ruiqi Liao, Bin Mao, Daniel J Conn, Charu Mehta, Sündüz Keleş, Yang Xia, Emery H Bresnick
GATA factor-regulated solute carrier ensemble reveals a nucleoside transporter-dependent differentiation mechanism. PLoS genetics 16 (12) (2020)
Ye Zheng, Sündüz Keleş
FreeHi-C simulates high-fidelity Hi-C data for benchmarking and data augmentation. Nature methods 17 (1) (2019)
Constanza Rojo, Qi Zhang, Sündüz Keleş
iFunMed: Integrative functional mediation analysis of GWAS and eQTL studies. Genetic epidemiology 43 (7) (2019)
Ye Zheng, Ferhat Ay, Sündüz Keleş
Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies. eLife 8 (2019)