Sushmita Roy

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 7

Top Topics

Gene Expression

Top Venues

Science advances

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Shilu Zhang, Saptarshi Pyne, Stefan Pietrzak, Spencer Halberg, Sunnie Grace McCalla, Alireza Fotuhi Siahpirani, Rupa Sridharan, Sushmita Roy
Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets. Nature communications 14 (1) (2023)
Brittany Baur, Junha Shin, Jacob Schreiber, Shilu Zhang, Yi Zhang, Mohith Manjunath, Jun S Song, William Stafford Noble, Sushmita Roy
Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. PLoS computational biology 19 (7) (2023)
Wendell Jacinto Pereira, Sara Knaack, Sanhita Chakraborty, Daniel Conde, Ryan A Folk, Paolo M Triozzi, Kelly M Balmant, Christopher Dervinis, Henry W Schmidt, Jean-Michel Ané, Sushmita Roy, Matias Kirst
Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade. The New phytologist 234 (2) (2022)
Sara A Knaack, Daniel Conde, Sanhita Chakraborty, Kelly M Balmant, Thomas B Irving, Lucas Gontijo Silva Maia, Paolo M Triozzi, Christopher Dervinis, Wendell J Pereira, Junko Maeda, Henry W Schmidt, Jean-Michel Ané, Matias Kirst, Sushmita Roy
Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula. BMC biology 20 (1) (2022)
Daniel Conde, Paolo M Triozzi, Wendell Jacinto Pereira, Henry W Schmidt, Kelly M Balmant, Sara A Knaack, Arturo Redondo-López, Sushmita Roy, Christopher Dervinis, Matias Kirst
Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus. Development (Cambridge, England) 149 (21) (2022)
Nisha R Iyer, Junha Shin, Stephanie Cuskey, Yucheng Tian, Noah R Nicol, Tessa E Doersch, Frank Seipel, Sunnie Grace McCalla, Sushmita Roy, Randolph Scott Ashton
Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patterns. Science advances 8 (39) (2022)
Da-Inn Lee, Sushmita Roy
GRiNCH: simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization. Genome biology 22 (1) (2021)