T Alex Perkins (Alex Perkins)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 44

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

PLoS medicine

PLoS computational biology

University of Notre Dame

University of California, Davis (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Notre Dame Sep 01 2014

United States

Associate Professor :: Biological Sciences

Fogarty International Center Sep 01 2011 - Aug 31 2014

United States

RAPIDD Postdoctoral Fellow

Education History

University of California, Davis Sep 01 2006 - Aug 31 2011

United States

PHD

Publications

Sung-Mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P Smith, Erica C Carcelén, Katie Yan, Samantha J Bents, John Levander, Jeremy U Espino, Joseph Chadi Lemaitre, Koji Sato, Clifton D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean M Cavany, Sean M Moore, T Alex Perkins, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha Ramdas Bandekar, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning S Mortveit, Mandy L Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Leroy Lewis, Madhav Marathe, Harry Hochheiser, Michael C Runge, Katriona Shea, Shaun A Truelove, Cecile Viboud, Justin Lessler
Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub. PLoS medicine 21 (4) (2024)
Sung-Mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P Smith, Erica C Carcelén, Katie Yan, Samantha J Bents, John Levander, Jeremy U Espino, Joseph Chadi Lemaitre, Koji Sato, Clifton D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean M Cavany, Sean M Moore, T Alex Perkins, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha Ramdas Bandekar, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning S Mortveit, Mandy L Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Leroy Lewis, Madhav Marathe, Harry Hochheiser, Michael C Runge, Katriona Shea, Shaun A Truelove, Cecile Viboud, Justin Lessler
Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub. PLoS medicine 21 (4) (2024)
Sung-Mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P Smith, Erica C Carcelén, Katie Yan, Samantha J Bents, John Levander, Jeremy U Espino, Joseph Chadi Lemaitre, Koji Sato, Clifton D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean M Cavany, Sean M Moore, T Alex Perkins, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha Ramdas Bandekar, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning S Mortveit, Mandy L Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Leroy Lewis, Madhav Marathe, Harry Hochheiser, Michael C Runge, Katriona Shea, Shaun A Truelove, Cecile Viboud, Justin Lessler
Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub. PLoS medicine 21 (4) (2024)
Sung-Mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P Smith, Erica C Carcelén, Katie Yan, Samantha J Bents, John Levander, Jeremy U Espino, Joseph Chadi Lemaitre, Koji Sato, Clifton D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean M Cavany, Sean M Moore, T Alex Perkins, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha Ramdas Bandekar, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning S Mortveit, Mandy L Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Leroy Lewis, Madhav Marathe, Harry Hochheiser, Michael C Runge, Katriona Shea, Shaun A Truelove, Cecile Viboud, Justin Lessler
Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub. PLoS medicine 21 (4) (2024)
Vinyas Harish, Felipe J Colón-González, Filipe R R Moreira, Rory Gibb, Moritz U G Kraemer, Megan Davis, Robert C Reiner, David M Pigott, T Alex Perkins, Daniel J Weiss, Isaac I Bogoch, Gonzalo M Vazquez-Prokopec, Pablo Manrique Saide, Gerson Laurindo Barbosa, Ester C Sabino, Kamran Khan, Nuno Rodrigues Faria, Simon I Hay, Fabián Correa-Morales, Francisco Chiaravalotti Neto, Oliver J Brady
Human movement and environmental barriers shape the emergence of dengue. Nature communications 15 (1) (2024)
Vinyas Harish, Felipe J Colón-González, Filipe R R Moreira, Rory Gibb, Moritz U G Kraemer, Megan Davis, Robert C Reiner, David M Pigott, T Alex Perkins, Daniel J Weiss, Isaac I Bogoch, Gonzalo M Vazquez-Prokopec, Pablo Manrique Saide, Gerson Laurindo Barbosa, Ester C Sabino, Kamran Khan, Nuno Rodrigues Faria, Simon I Hay, Fabián Correa-Morales, Francisco Chiaravalotti Neto, Oliver J Brady
Human movement and environmental barriers shape the emergence of dengue. Nature communications 15 (1) (2024)
Vinyas Harish, Felipe J Colón-González, Filipe R R Moreira, Rory Gibb, Moritz U G Kraemer, Megan Davis, Robert C Reiner, David M Pigott, T Alex Perkins, Daniel J Weiss, Isaac I Bogoch, Gonzalo M Vazquez-Prokopec, Pablo Manrique Saide, Gerson Laurindo Barbosa, Ester C Sabino, Kamran Khan, Nuno Rodrigues Faria, Simon I Hay, Fabián Correa-Morales, Francisco Chiaravalotti Neto, Oliver J Brady
Human movement and environmental barriers shape the emergence of dengue. Nature communications 15 (1) (2024)
Sung-Mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P Smith, Erica C Carcelén, Katie Yan, Samantha J Bents, John Levander, Jeremy U Espino, Joseph Chadi Lemaitre, Koji Sato, Clifton D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean M Cavany, Sean M Moore, T Alex Perkins, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha Ramdas Bandekar, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning S Mortveit, Mandy L Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Leroy Lewis, Madhav Marathe, Harry Hochheiser, Michael C Runge, Katriona Shea, Shaun A Truelove, Cecile Viboud, Justin Lessler
Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub. PLoS medicine 21 (4) (2024)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Emily Howerton, Lucie Contamin, Luke C Mullany, Michelle Qin, Nicholas G Reich, Samantha Bents, Rebecca K Borchering, Sung-Mok Jung, Sara L Loo, Claire P Smith, John D Levander, Jessica E Salerno, Jeremy U Espino, Willem G van Panhuis, Harry Hochheiser, Marta Galanti, Teresa K Yamana, Sen Pei, Jeffrey L Shaman, Kaitlin Rainwater-Lovett, Matt Kinsey, Kate Tallaksen, Shelby Wilson, Lauren Shin, Joseph Chadi Lemaitre, Joshua Kaminsky, Juan Dent Hulse, Elizabeth C Lee, Clifton D McKee, Alison Hill, Dean Karlen, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Xinyue Xiong, Ana Pastore Y Piontti, Alessandro Vespignani, Erik T Rosenstrom, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean M Cavany, Sean M Moore, T Alex Perkins, Thomas J Hladish, Alexander N Pillai, Kok Ben Toh, Ira M Longini, Shi Chen, Rajib Paul, Daniel A Janies, Jean-Claude Thill, Anass Bouchnita, Kaiming Bi, Michael Lachmann, Spencer Fox, Lauren Ancel Meyers, null null, Ajitesh Srivastava, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Bryan Leroy Lewis, Brian Klahn, Joseph Outten, Benjamin Hurt, Jiangzhuo Chen, Henning S Mortveit, Amanda Wilson, Prashant Rangarajan, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Betsy L Cadwell, Jessica M Healy, Rachel B Slayton, Michael A Johansson, Matthew Biggerstaff, Shaun A Truelove, Michael C Runge, Katriona Shea, Cecile Viboud, Justin Lessler
Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub . medRxiv : the preprint server for health sciences (2023)
Gonzalo M Vazquez-Prokopec, Amy C Morrison, Valerie Paz-Soldan, Steven T Stoddard, William Koval, Lance Allyn Waller, T Alex Perkins, Alun L Lloyd, Helvio Astete, John Elder, Thomas W Scott, Uriel Kitron
Inapparent infections shape the transmission heterogeneity of dengue. PNAS nexus 2 (3) (2023)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Emily Howerton, Lucie Contamin, Luke C Mullany, Michelle Qin, Nicholas G Reich, Samantha Bents, Rebecca K Borchering, Sung-Mok Jung, Sara L Loo, Claire P Smith, John D Levander, Jessica Kerr, Jeremy U Espino, Willem G van Panhuis, Harry Hochheiser, Marta Galanti, Teresa K Yamana, Sen Pei, Jeffrey L Shaman, Kaitlin Rainwater-Lovett, Matt Kinsey, Kate Tallaksen, Shelby Wilson, Lauren Shin, Joseph Chadi Lemaitre, Joshua Kaminsky, Juan Dent Hulse, Elizabeth C Lee, Clifton D McKee, Alison L Hill, Dean Karlen, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Xinyue Xiong, Ana Pastore Y Piontti, Alessandro Vespignani, Erik T Rosenstrom, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean Cavany, Sean M Moore, T Alex Perkins, Thomas Hladish, Alexander Pillai, Kok Ben Toh, Ira Longini, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Anass Bouchnita, Kaiming Bi, Michael Lachmann, Spencer J Fox, Lauren Ancel Meyers, Ajitesh Srivastava, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Bryan Leroy Lewis, Brian Klahn, Joseph Outten, Benjamin Hurt, Jiangzhuo Chen, Henning Mortveit, Mandy L Wilson, Madhav Marathe, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Betsy L Cadwell, Jessica M Healy, Rachel B Slayton, Michael A Johansson, Matthew Biggerstaff, Shaun A Truelove, Michael C Runge, Katriona Shea, Cecile Viboud, Justin Lessler
Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty. Nature communications 14 (1) (2023)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Sung-Mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P Smith, Erica C Carcelén, Katie Yan, Samantha J Bents, John D Levander, Jeremy U Espino, Nicholas G Reich, Joseph Chadi Lemaitre, Koji Sato, Clifton D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean M Cavany, Sean M Moore, T Alex Perkins, Shi Chen, Rajib Paul, Daniel A Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha Ramdas Bandekar, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning S Mortveit, Amanda Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Leroy Lewis, Prashant Rangarajan, Harry Hochheiser, Michael C Runge, Katriona Shea, Shaun A Truelove, Cecile Viboud, Justin Lessler
Potential impact of annual vaccination with reformulated COVID-19 vaccines: lessons from the U.S. COVID-19 Scenario Modeling Hub. medRxiv : the preprint server for health sciences (2023)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Gonzalo M Vazquez-Prokopec, Amy C Morrison, Valerie Paz-Soldan, Steven T Stoddard, William Koval, Lance Allyn Waller, T Alex Perkins, Alun L Lloyd, Helvio Astete, John Elder, Thomas W Scott, Uriel Kitron
Inapparent infections shape the transmission heterogeneity of dengue. PNAS nexus 2 (3) (2023)
Katriona Shea, Rebecca K Borchering, William J M Probert, Emily Howerton, Tiffany L Bogich, Shou-Li Li, Willem G van Panhuis, Cecile Viboud, Ricardo Aguas, Artur A Belov, Sanjana H Bhargava, Sean M Cavany, Joshua C Chang, Cynthia Chen, Jinghui Chen, Shi Chen, YangQuan Chen, Lauren M Childs, Carson C Chow, Isabel Crooker, Sara Y Del Valle, Guido España, Geoffrey Fairchild, Richard C Gerkin, Timothy C Germann, Quanquan Gu, Xiangyang Guan, Lihong Guo, Gregory R Hart, Thomas J Hladish, Nathaniel Hupert, Daniel Janies, Cliff C Kerr, Daniel J Klein, Eili Y Klein, Gary Lin, Carrie Manore, Lauren Ancel Meyers, John E Mittler, Kunpeng Mu, Rafael C Núñez, Rachel J Oidtman, Remy Pasco, Ana Pastore Y Piontti, Rajib Paul, Carl A B Pearson, Dianela R Perdomo, T Alex Perkins, Kelly Pierce, Alexander N Pillai, Rosalyn Cherie Rael, Katherine A Rosenfeld, Chrysm Watson Ross, Julie Allison Spencer, Arlin B Stoltzfus, Kok Ben Toh, Shashaank Vattikuti, Alessandro Vespignani, Lingxiao Wang, Lisa Jane White, Pan Xu, Yupeng Yang, Osman N Yogurtcu, Weitong Zhang, Yanting Zhao, Difan Zou, Matthew J Ferrari, David Pannell, Michael J Tildesley, Jack Seifarth, Elyse Johnson, Matthew Biggerstaff, Michael A Johansson, Rachel B Slayton, John D Levander, Jeff Stazer, Jessica Kerr, Michael C Runge
Multiple models for outbreak decision support in the face of uncertainty. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Estee Y Cramer, Evan L Ray, Velma K Lopez, Johannes Bracher, Andrea Brennen, Alvaro J Castro Rivadeneira, Aaron Gerding, Tilmann Gneiting, Katie H House, Yuxin Huang, Dasuni Jayawardena, Abdul H Kanji, Ayush Khandelwal, Khoa Le, Anja Mühlemann, Jarad Niemi, Apurv Shah, Ariane Stark, Yijin Wang, Nutcha Wattanachit, Martha W Zorn, Youyang Gu, Sansiddh Jain, Nayana Bannur, Ayush Deva, Mihir Kulkarni, Srujana Merugu, Alpan Raval, Siddhant Shingi, Avtansh Tiwari, Jerome White, Neil F Abernethy, Spencer Woody, Maytal Dahan, Spencer J Fox, Kelly Gaither, Michael Lachmann, Lauren Ancel Meyers, James G Scott, Mauricio Tec, Ajitesh Srivastava, Glover E George, Jeffrey C Cegan, Ian D Dettwiller, William P England, Matthew W Farthing, Robert H Hunter, Brandon Lafferty, Igor Linkov, Michael L Mayo, Matthew D Parno, Michael A Rowland, Benjamin D Trump, Yanli Zhang-James, Samuel Chen, Stephen V Faraone, Jonathan Hess, Christopher P Morley, Asif Salekin, Dongliang Wang, Sabrina M Corsetti, Thomas M Baer, Marisa C Eisenberg, Karl Falb, Yitao Huang, Emily T Martin, Ella McCauley, Robert L Myers, Tom Schwarz, Daniel R Sheldon, Graham Casey Gibson, Rose Yu, Liyao Gao, Yian Ma, Dongxia Wu, Xifeng Yan, Xiaoyong Jin, Yu-Xiang Wang, YangQuan Chen, Lihong Guo, Yanting Zhao, Quanquan Gu, Jinghui Chen, Lingxiao Wang, Pan Xu, Weitong Zhang, Difan Zou, Hannah Biegel, Joceline Lega, Steve McConnell, V P Nagraj, Stephanie L Guertin, Christopher Hulme-Lowe, Stephen D Turner, Yunfeng Shi, Xuegang Ban, Robert Walraven, Qi-Jun Hong, Stanley Kong, Axel van de Walle, James A Turtle, Michal Ben-Nun, Steven Riley, Pete Riley, Ugur Koyluoglu, David DesRoches, Pedro Forli, Bruce Hamory, Christina Kyriakides, Helen Leis, John Milliken, Michael Moloney, James Morgan, Ninad Nirgudkar, Gokce Ozcan, Noah Piwonka, Matt Ravi, Chris Schrader, Elizabeth Shakhnovich, Daniel Siegel, Ryan Spatz, Chris Stiefeling, Barrie Wilkinson, Alexander Wong, Sean M Cavany, Guido España, Sean M Moore, Rachel J Oidtman, T Alex Perkins, David Kraus, Andrea Kraus, Zhifeng Gao, Jiang Bian, Wei Cao, Juan M Lavista Ferres, Chaozhuo Li, Tie-Yan Liu, Xing Xie, Shun Zhang, Shun Zheng, Alessandro Vespignani, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Ana Pastore Y Piontti, Xinyue Xiong, Andrew Zheng, Jackie Baek, Vivek Farias, Andreea Georgescu, Retsef Levi, Deeksha Sinha, Joshua Wilde, Georgia Perakis, Mohammed Amine Bennouna, David Nze-Ndong, Divya Singhvi, Ioannis Spantidakis, Leann Thayaparan, Asterios Tsiourvas, Arnab Sarker, Ali Jadbabaie, Devavrat Shah, Nicolas Della Penna, Leo Anthony Celi, Saketh Sundar, Russ Wolfinger, Dave Osthus, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dean Karlen, Matt Kinsey, Luke C Mullany, Kaitlin Rainwater-Lovett, Lauren Shin, Katharine Tallaksen, Shelby Wilson, Elizabeth C Lee, Juan Dent Hulse, Kyra H Grantz, Alison L Hill, Joshua Kaminsky, Kathryn Kaminsky, Lindsay T Keegan, Stephen A Lauer, Joseph Chadi Lemaitre, Justin Lessler, Hannah R Meredith, Javier Perez-Saez, Sam Shah, Claire P Smith, Shaun A Truelove, Josh Wills, Maximilian Marshall, Lauren Gardner, Kristen Nixon, John C Burant, Lily Wang, Lei Gao, Zhiling Gu, Myungjin Kim, Xinyi Li, Guannan Wang, Yueying Wang, Shan Yu, Robert C Reiner, Ryan Barber, Emmanuela Gakidou, Simon I Hay, Steve Lim, Christopher J L Murray, David Pigott, Heidi L Gurung, Prasith Baccam, Steven A Stage, Bradley T Suchoski, B Aditya Prakash, Bijaya Adhikari, Jiaming Cui, Alexander Rodríguez, Anika Tabassum, Jiajia Xie, Pınar Keskinocak, John Asplund, Arden Baxter, Buse Eylul Oruc, Nicoleta Serban, Sercan O Arik, Mike Dusenberry, Arkady Epshteyn, Elli Kanal, Long T Le, Chun-Liang Li, Tomas Pfister, Dario Sava, Rajarishi Sinha, Thomas Tsai, Nathanael C Yoder, Jinsung Yoon, Leyou Zhang, Sam Abbott, Nikos I Bosse, Sebastian Funk, Joel Hellewell, Sophie R Meakin, Katharine Sherrat, Mingyuan Zhou, Rahi Kalantari, Teresa K Yamana, Sen Pei, Jeffrey L Shaman, Michael Lingzhi Li, Dimitris Bertsimas, Omar Skali Lami, Saksham Soni, Hamza Tazi Bouardi, Turgay Ayer, Madeline Adee, Jagpreet Chhatwal, Ozden O Dalgic, Mary A Ladd, Benjamin P Linas, Peter Mueller, Jade Xiao, Yuanjia Wang, Qinxia Wang, Shanghong Xie, Donglin Zeng, Alden Green, Jacob Bien, Logan Brooks, Addison J Hu, Maria Jahja, Daniel J McDonald, Balasubramanian Narasimhan, Collin A Politsch, Samyak Rajanala, Aaron Rumack, Noah Simon, Ryan J Tibshirani, Rob Tibshirani, Valerie Ventura, Larry Wasserman, Eamon B O'Dea, John M Drake, Robert Pagano, Quoc T Tran, Lam Si Tung Ho, Huong Huynh, Jo W Walker, Rachel B Slayton, Michael A Johansson, Matthew Biggerstaff, Nicholas G Reich
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States. Proceedings of the National Academy of Sciences of the United States of America 119 (15) (2022)
Guido España, T Alex Perkins, Simon D Pollett, Morgan E Smith, Sean M Moore, Paul O Kwon, Tara L Hall, Milford H Beagle, Clinton K Murray, Shilpa Hakre, Sheila A Peel, Kayvon Modjarrad, Paul T Scott
Prioritizing interventions for preventing COVID-19 outbreaks in military basic training. PLoS computational biology 18 (10) (2022)
Sean M Cavany, Aaron Bivins, Zhenyu Wu, Devin North, Kyle Bibby, T Alex Perkins
Inferring SARS-CoV-2 RNA shedding into wastewater relative to the time of infection. Epidemiology and infection 150 (2022)
T Alex Perkins, Melissa Stephens, Wendy Alvarez Barrios, Sean Cavany, Liz Rulli, Michael E Pfrender
Performance of Three Tests for SARS-CoV-2 on a University Campus Estimated Jointly with Bayesian Latent Class Modeling. Microbiology spectrum 10 (1) (2022)
Rachel J Oidtman, Elisa Omodei, Moritz U G Kraemer, Carlos A Castañeda-Orjuela, Erica Cruz-Rivera, Sandra Misnaza-Castrillón, Myriam Patricia Cifuentes, Luz Emilse Rincon, Viviana Cañon, Pedro de Alarcon, Guido España, John H Huber, Sarah Catherine Hill, Christopher M Barker, Michael A Johansson, Carrie A Manore, Robert C Reiner, Isabel Rodriguez-Barraquer, Amir S Siraj, Enrique Frias-Martinez, Manuel García-Herranz, T Alex Perkins
Trade-offs between individual and ensemble forecasts of an emerging infectious disease. Nature communications 12 (1) (2021)
Anderson Fernandes Brito, Lais Ceschini Machado, Rachel J Oidtman, Márcio Junio Lima Siconelli, Quan Minh Tran, Joseph R Fauver, Rodrigo Dias de Oliveira Carvalho, Filipe Zimmer Dezordi, Mylena Ribeiro Pereira, Luiza Antunes de Castro-Jorge, Elaine Cristina Manini Minto, Luzia Márcia Romanholi Passos, Chaney C Kalinich, Mary E Petrone, Emma Allen, Guido Camargo España, Angkana T Huang, Derek A T Cummings, Guy Baele, Rafael Freitas de Oliveira Franca, Benedito Antônio Lopes da Fonseca, T Alex Perkins, Gabriel da Luz Wallau, Nathan D Grubaugh
Lying in wait: the resurgence of dengue virus after the Zika epidemic in Brazil. Nature communications 12 (1) (2021)
T Alex Perkins, John H Huber, Quan Minh Tran, Rachel J Oidtman, Magdalene K Walters, Amir S Siraj, Sean M Moore
Burden is in the eye of the beholder: Sensitivity of yellow fever disease burden estimates to modeling assumptions. Science advances 7 (42) (2021)
Jaspreet Toor, Susy Echeverria-Londono, Xiang Li, Kaja Abbas, Emily D Carter, Hannah E Clapham, Andrew Clark, Margaret J de Villiers, Kirsten Eilertson, Matthew Ferrari, Ivane Gamkrelidze, Timothy B Hallett, Wes R Hinsley, Daniel Hogan, John H Huber, Michael L Jackson, Kévin Jean, Mark Jit, Andromachi Karachaliou, Petra Klepac, Alicia Kraay, Justin Lessler, Xi Li, Benjamin A Lopman, Tewodaj Mengistu, Charlotte Jessica E Metcalf, Sean M Moore, Shevanthi Nayagam, Timos Papadopoulos, T Alex Perkins, Allison Portnoy, Homie Razavi, Devin Razavi-Shearer, Stephen Resch, Colin Sanderson, Steven Sweet, Yvonne Tam, Hira Tanvir, Quan Tran Minh, Caroline L Trotter, Shaun A Truelove, Emilia Vynnycky, Neff Walker, Amy Winter, Kim Woodruff, Neil M Ferguson, Katy A M Gaythorpe
Lives saved with vaccination for 10 pathogens across 112 countries in a pre-COVID-19 world. eLife 10 (2021)
Katy A M Gaythorpe, Kaja Abbas, John H Huber, Andromachi Karachaliou, Niket Thakkar, Kim Woodruff, Xiang Li, Susy Echeverria-Londono, null null, Matthew Ferrari, Michael L Jackson, Kevin McCarthy, T Alex Perkins, Caroline Trotter, Mark Jit
Impact of COVID-19-related disruptions to measles, meningococcal A, and yellow fever vaccination in 10 countries. eLife 10 (2021)
Marya L Poterek, Moritz U G Kraemer, Alexander Watts, Kamran Khan, T Alex Perkins
Air Passenger Travel and International Surveillance Data Predict Spatiotemporal Variation in Measles Importations to the United States. Pathogens (Basel, Switzerland) 10 (2) (2021)
Gebienna M Bron, Kathryn Strimbu, Hélène Cecilia, Anita Lerch, Sean M Moore, Quan Minh Tran, T Alex Perkins, Quirine A Ten Bosch
Over 100 Years of Rift Valley Fever: A Patchwork of Data on Pathogen Spread and Spillover. Pathogens (Basel, Switzerland) 10 (6) (2021)
T Alex Perkins, Guido España
Optimal Control of the COVID-19 Pandemic with Non-pharmaceutical Interventions. Bulletin of mathematical biology 82 (9) (2020)
Sean M Cavany, Guido España, Alun L Lloyd, Lance Allyn Waller, Uriel Kitron, Helvio Astete, William H Elson, Gonzalo M Vazquez-Prokopec, Thomas W Scott, Amy C Morrison, Robert C Reiner, T Alex Perkins
Optimizing the deployment of ultra-low volume and targeted indoor residual spraying for dengue outbreak response. PLoS computational biology 16 (4) (2020)
T Alex Perkins
Letter to the editor in response to 'Reconstruction and prediction of viral disease epidemics'. Epidemiology and infection 147 (2020)
T Alex Perkins, Sean M Cavany, Sean M Moore, Rachel J Oidtman, Anita Lerch, Marya L Poterek
Estimating unobserved SARS-CoV-2 infections in the United States. Proceedings of the National Academy of Sciences of the United States of America 117 (36) (2020)
Quirine A Ten Bosch, Joseph M Wagman, Fanny Castro-Llanos, Nicole L Achee, John P Grieco, T Alex Perkins
Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes. PLoS computational biology 16 (9) (2020)
Chantal B F Vogels, Claudia Rückert, Sean M Cavany, T Alex Perkins, Gregory D Ebel, Nathan D Grubaugh
Arbovirus coinfection and co-transmission: A neglected public health concern? PLoS biology 17 (1) (2019)
T Alex Perkins, Robert C Reiner, Guido España, Quirine A Ten Bosch, Amit Verma, Kelly A Liebman, Valerie A Paz-Soldan, John P Elder, Amy C Morrison, Steven T Stoddard, Uriel Kitron, Gonzalo M Vazquez-Prokopec, Thomas W Scott, David L Smith
An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections. PLoS computational biology 15 (3) (2019)
Guido España, Yutong Yao, Kathryn B Anderson, Meagan C Fitzpatrick, David L Smith, Amy C Morrison, Annelies Wilder-Smith, Thomas W Scott, T Alex Perkins
Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure. PLoS neglected tropical diseases 13 (7) (2019)
Sean M Moore, Quirine A Ten Bosch, Amir S Siraj, K James Soda, Guido España, Alfonso Campo, Sara Gómez, Daniela Salas, Benoit Raybaud, Edward Wenger, Philip Welkhoff, T Alex Perkins
Local and regional dynamics of chikungunya virus transmission in Colombia: the role of mismatched spatial heterogeneity. BMC medicine 16 (1) (2018)
Quirine A Ten Bosch, Hannah E Clapham, Louis Lambrechts, Veasna Duong, Philippe Buchy, Benjamin M Althouse, Alun L Lloyd, Lance A Waller, Amy C Morrison, Uriel Kitron, Gonzalo M Vazquez-Prokopec, Thomas W Scott, T Alex Perkins
Contributions from the silent majority dominate dengue virus transmission. PLoS pathogens 14 (5) (2018)
Amir S Siraj, T Alex Perkins
Assessing the population at risk of Zika virus in Asia - is the emergency really over? BMJ global health 2 (3) (2017)
John H Huber, Geoffrey L Johnston, Bryan Greenhouse, David L Smith, T Alex Perkins
Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria. Malaria journal 15 (1) (2016)

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T Alex Perkins (Alex Perkins)