Sebastian Funk (S Funk)

Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 61

Top Venues

Wellcome open research

PLoS computational biology

eLife

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Sung-Mok Jung, Fuminari Miura, Hiroaki Murayama, Sebastian Funk, Jacco Wallinga, Justin Lessler, Akira Endo 遠藤彰
Dynamic landscape of mpox importation risks driven by heavy-tailed sexual contact networks among men who have sex with men in 2022. The Journal of infectious diseases (2024)
Harrison Manley, Thomas Bayley, Gabriel Danelian, Lucy Burton, Thomas Finnie, Andre Charlett, Nicholas A Watkins, Paul Birrell, Daniela De Angelis, Matt J Keeling, Sebastian Funk, Graham Medley, Lorenzo Pellis, Marc Baguelin, Graeme J Ackland, Johanna Hutchinson, Steven Riley, Jasmina Panovska-Griffiths
Combining models to generate consensus medium-term projections of hospital admissions, occupancy and deaths relating to COVID-19 in England. Royal Society open science 11 (2024)
Katharine Sherrat, Anna C Carnegie, Adam Kucharski, Anne Cori, Carl A B Pearson, Christopher I Jarvis, Christopher Overton, Dale Weston, Edward M Hill, Edward Knock, Elizabeth Fearon, Emily S Nightingale, Joel Hellewell, W John Edmunds, Julián Villabona Arenas, Kiesha Prem, Li Pi, Marc Baguelin, Michelle Kendall, Neil Ferguson, Nicholas Davies, Rosalind M Eggo, Sabine L van Elsland, Timothy W Russell, Sebastian Funk, Yang Liu, Sam Abbott
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic. Wellcome open research 9 (2024)
Katharine Sherrat, Anna C Carnegie, Adam Kucharski, Anne Cori, Carl A B Pearson, Christopher I Jarvis, Christopher Overton, Dale Weston, Edward M Hill, Edward Knock, Elizabeth Fearon, Emily S Nightingale, Joel Hellewell, W John Edmunds, Julián Villabona Arenas, Kiesha Prem, Li Pi, Marc Baguelin, Michelle Kendall, Neil Ferguson, Nicholas Davies, Rosalind M Eggo, Sabine L van Elsland, Timothy W Russell, Sebastian Funk, Yang Liu, Sam Abbott
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic. Wellcome open research 9 (2024)
Harrison Manley, Thomas Bayley, Gabriel Danelian, Lucy Burton, Thomas Finnie, Andre Charlett, Nicholas A Watkins, Paul Birrell, Daniela De Angelis, Matt J Keeling, Sebastian Funk, Graham Medley, Lorenzo Pellis, Marc Baguelin, Graeme J Ackland, Johanna Hutchinson, Steven Riley, Jasmina Panovska-Griffiths
Combining models to generate consensus medium-term projections of hospital admissions, occupancy and deaths relating to COVID-19 in England. Royal Society open science 11 (2024)
Nikos I Bosse, Sam Abbott, Anne Cori, Edwin Van Leeuwen, Johannes Bracher, Sebastian Funk
Scoring epidemiological forecasts on transformed scales. PLoS computational biology 19 (8) (2023)
Katharine Sherrat, Hugo Gruson, Rok Grah, Helen Johnson, Rene Niehus, Bastian Prasse, Frank Sandmann, Jannik Deuschel, Daniel Wolffram, Sam Abbott, Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Jan Trnka, Guillaume Obozinski, Tao Sun, Dorina Thanou, Loic Pottier, Ekaterina Krymova, Jan H Meinke, Maria Vittoria Barbarossa, Neele Leithäuser, Jan Mohring, Johanna Schneider, Jaroslaw Włazło, Jan Fuhrmann, Berit Lange, Isti Rodiah, Prasith Baccam, Heidi Gurung, Steven Stage, Bradley Suchoski, Jozef Budzinski, Robert Walraven, Inmaculada Villanueva, Vit Tucek, Martin Smid, Milan Zajíček, Cesar Pérez Álvarez, Borja Reina, Nikos I Bosse, Sophie R Meakin, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Pierfrancesco Alaimo Di Loro, Antonello Maroutti, Veronika Eclerová, Andrea Kraus, David Kraus, Lenka Pribylova, Bertsimas Dimitris, Michael Lingzhi Li, Soni Saksham, Jonas Dehning, Sebastian Mohr, Viola Priesemann, Grzegorz Redlarski, Benjamin Bejar, Giovanni Ardenghi, Nicola Parolini, Giovanni Ziarelli, Wolfgang Bock, Stefan Heyder, Thomas Hotz, David E Singh, Miguel Guzman-Merino, Jose L Aznarte, David Moriña, Sergio Alonso Muñoz, Enric Álvarez, Daniel López, Clara Prats, Jan Pablo Burgard, Arne Rodloff, Tom Zimmermann, Alexander Kuhlmann, Janez Zibert, Fulvia Pennoni, Fabio Divino, Marti Català, Gianfranco Lovison, Paolo Giudici, Barbara Tarantino, Francesco Bartolucci, Giovanna Jona Lasinio, Marco Mingione, Alessio Farcomeni, Ajitesh Srivastava, Pablo Montero-Manso, Aniruddha Adiga, Benjamin Hurt, Bryan Leroy Lewis, Madhav Marathe, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Rafał Piotr Bartczuk, Filip Dreger, Anna Gambin, Krzysztof Gogolewski, Magdalena Gruziel-Słomka, Bartosz Krupa, Antoni Moszyński, Karol Niedzielewski, Jedrzej Nowosielski, Maciej Radwan, Franciszek Rakowski, Marcin Semeniuk, Ewa Szczurek, Jakub Zielinski, Jan Kisielewski, Barbara Pabjan, Holger Kirsten, Yuri Kheifetz, Markus Scholz, Przemysław Biecek, Marcin Bodych, Maciej Filinski, Radoslaw Idzikowski, Tyll Krueger, Tomasz Ozanski, Johannes Bracher, Sebastian Funk
Predictive performance of multi-model ensemble forecasts of COVID-19 across European nations. eLife 12 (2023)
James D Munday, Sam Abbott, Sophie Meakin, Sebastian Funk
Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England. PLoS computational biology 19 (9) (2023)
Katharine Sherrat, Hugo Gruson, Rok Grah, Helen Johnson, Rene Niehus, Bastian Prasse, Frank Sandmann, Jannik Deuschel, Daniel Wolffram, Sam Abbott, Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Jan Trnka, Guillaume Obozinski, Tao Sun, Dorina Thanou, Loic Pottier, Ekaterina Krymova, Jan H Meinke, Maria Vittoria Barbarossa, Neele Leithäuser, Jan Mohring, Johanna Schneider, Jaroslaw Włazło, Jan Fuhrmann, Berit Lange, Isti Rodiah, Prasith Baccam, Heidi Gurung, Steven Stage, Bradley Suchoski, Jozef Budzinski, Robert Walraven, Inmaculada Villanueva, Vit Tucek, Martin Smid, Milan Zajíček, Cesar Pérez Álvarez, Borja Reina, Nikos I Bosse, Sophie R Meakin, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Pierfrancesco Alaimo Di Loro, Antonello Maroutti, Veronika Eclerová, Andrea Kraus, David Kraus, Lenka Pribylova, Bertsimas Dimitris, Michael Lingzhi Li, Soni Saksham, Jonas Dehning, Sebastian Mohr, Viola Priesemann, Grzegorz Redlarski, Benjamin Bejar, Giovanni Ardenghi, Nicola Parolini, Giovanni Ziarelli, Wolfgang Bock, Stefan Heyder, Thomas Hotz, David E Singh, Miguel Guzman-Merino, Jose L Aznarte, David Moriña, Sergio Alonso Muñoz, Enric Álvarez, Daniel López, Clara Prats, Jan Pablo Burgard, Arne Rodloff, Tom Zimmermann, Alexander Kuhlmann, Janez Zibert, Fulvia Pennoni, Fabio Divino, Marti Català, Gianfranco Lovison, Paolo Giudici, Barbara Tarantino, Francesco Bartolucci, Giovanna Jona Lasinio, Marco Mingione, Alessio Farcomeni, Ajitesh Srivastava, Pablo Montero-Manso, Aniruddha Adiga, Benjamin Hurt, Bryan Leroy Lewis, Madhav Marathe, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Rafał Piotr Bartczuk, Filip Dreger, Anna Gambin, Krzysztof Gogolewski, Magdalena Gruziel-Słomka, Bartosz Krupa, Antoni Moszyński, Karol Niedzielewski, Jedrzej Nowosielski, Maciej Radwan, Franciszek Rakowski, Marcin Semeniuk, Ewa Szczurek, Jakub Zielinski, Jan Kisielewski, Barbara Pabjan, Holger Kirsten, Yuri Kheifetz, Markus Scholz, Przemysław Biecek, Marcin Bodych, Maciej Filinski, Radoslaw Idzikowski, Tyll Krueger, Tomasz Ozanski, Johannes Bracher, Sebastian Funk
Predictive performance of multi-model ensemble forecasts of COVID-19 across European nations. eLife 12 (2023)
Katharine Sherrat, Hugo Gruson, Rok Grah, Helen Johnson, Rene Niehus, Bastian Prasse, Frank Sandmann, Jannik Deuschel, Daniel Wolffram, Sam Abbott, Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Jan Trnka, Guillaume Obozinski, Tao Sun, Dorina Thanou, Loic Pottier, Ekaterina Krymova, Jan H Meinke, Maria Vittoria Barbarossa, Neele Leithäuser, Jan Mohring, Johanna Schneider, Jaroslaw Włazło, Jan Fuhrmann, Berit Lange, Isti Rodiah, Prasith Baccam, Heidi Gurung, Steven Stage, Bradley Suchoski, Jozef Budzinski, Robert Walraven, Inmaculada Villanueva, Vit Tucek, Martin Smid, Milan Zajíček, Cesar Pérez Álvarez, Borja Reina, Nikos I Bosse, Sophie R Meakin, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Pierfrancesco Alaimo Di Loro, Antonello Maroutti, Veronika Eclerová, Andrea Kraus, David Kraus, Lenka Pribylova, Bertsimas Dimitris, Michael Lingzhi Li, Soni Saksham, Jonas Dehning, Sebastian Mohr, Viola Priesemann, Grzegorz Redlarski, Benjamin Bejar, Giovanni Ardenghi, Nicola Parolini, Giovanni Ziarelli, Wolfgang Bock, Stefan Heyder, Thomas Hotz, David E Singh, Miguel Guzman-Merino, Jose L Aznarte, David Moriña, Sergio Alonso Muñoz, Enric Álvarez, Daniel López, Clara Prats, Jan Pablo Burgard, Arne Rodloff, Tom Zimmermann, Alexander Kuhlmann, Janez Zibert, Fulvia Pennoni, Fabio Divino, Marti Català, Gianfranco Lovison, Paolo Giudici, Barbara Tarantino, Francesco Bartolucci, Giovanna Jona Lasinio, Marco Mingione, Alessio Farcomeni, Ajitesh Srivastava, Pablo Montero-Manso, Aniruddha Adiga, Benjamin Hurt, Bryan Leroy Lewis, Madhav Marathe, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Rafał Piotr Bartczuk, Filip Dreger, Anna Gambin, Krzysztof Gogolewski, Magdalena Gruziel-Słomka, Bartosz Krupa, Antoni Moszyński, Karol Niedzielewski, Jedrzej Nowosielski, Maciej Radwan, Franciszek Rakowski, Marcin Semeniuk, Ewa Szczurek, Jakub Zielinski, Jan Kisielewski, Barbara Pabjan, Holger Kirsten, Yuri Kheifetz, Markus Scholz, Przemysław Biecek, Marcin Bodych, Maciej Filinski, Radoslaw Idzikowski, Tyll Krueger, Tomasz Ozanski, Johannes Bracher, Sebastian Funk
Predictive performance of multi-model ensemble forecasts of COVID-19 across European nations. eLife 12 (2023)
Sang Woo Park, Kaiyuan Sun, Sam Abbott, Ron Sender, Yinon M Bar-On, Joshua S Weitz, Sebastian Funk, Bryan T Grenfell, Jantien A Backer, Jacco Wallinga, Cecile Viboud, Jonathan Dushoff
Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America 120 (22) (2023)
Daniel Wolffram, Sam Abbott, Matthias An der Heiden, Sebastian Funk, Felix Günther, Davide Hailer, Stefan Heyder, Thomas Hotz, Jan van de Kassteele, Helmut Küchenhoff, Sören Müller-Hansen, Diellë Syliqi, Alexander Ullrich, Maximilian Weigert, Melanie Schienle, Johannes Bracher
Collaborative nowcasting of COVID-19 hospitalization incidences in Germany. PLoS computational biology 19 (8) (2023)
Katharine Sherrat, Hugo Gruson, Rok Grah, Helen Johnson, Rene Niehus, Bastian Prasse, Frank Sandmann, Jannik Deuschel, Daniel Wolffram, Sam Abbott, Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Jan Trnka, Guillaume Obozinski, Tao Sun, Dorina Thanou, Loic Pottier, Ekaterina Krymova, Jan H Meinke, Maria Vittoria Barbarossa, Neele Leithäuser, Jan Mohring, Johanna Schneider, Jaroslaw Włazło, Jan Fuhrmann, Berit Lange, Isti Rodiah, Prasith Baccam, Heidi Gurung, Steven Stage, Bradley Suchoski, Jozef Budzinski, Robert Walraven, Inmaculada Villanueva, Vit Tucek, Martin Smid, Milan Zajíček, Cesar Pérez Álvarez, Borja Reina, Nikos I Bosse, Sophie R Meakin, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Pierfrancesco Alaimo Di Loro, Antonello Maroutti, Veronika Eclerová, Andrea Kraus, David Kraus, Lenka Pribylova, Bertsimas Dimitris, Michael Lingzhi Li, Soni Saksham, Jonas Dehning, Sebastian Mohr, Viola Priesemann, Grzegorz Redlarski, Benjamin Bejar, Giovanni Ardenghi, Nicola Parolini, Giovanni Ziarelli, Wolfgang Bock, Stefan Heyder, Thomas Hotz, David E Singh, Miguel Guzman-Merino, Jose L Aznarte, David Moriña, Sergio Alonso Muñoz, Enric Álvarez, Daniel López, Clara Prats, Jan Pablo Burgard, Arne Rodloff, Tom Zimmermann, Alexander Kuhlmann, Janez Zibert, Fulvia Pennoni, Fabio Divino, Marti Català, Gianfranco Lovison, Paolo Giudici, Barbara Tarantino, Francesco Bartolucci, Giovanna Jona Lasinio, Marco Mingione, Alessio Farcomeni, Ajitesh Srivastava, Pablo Montero-Manso, Aniruddha Adiga, Benjamin Hurt, Bryan Leroy Lewis, Madhav Marathe, Przemyslaw Jerzy Porebski, Srinivasan Venkatramanan, Rafał Piotr Bartczuk, Filip Dreger, Anna Gambin, Krzysztof Gogolewski, Magdalena Gruziel-Słomka, Bartosz Krupa, Antoni Moszyński, Karol Niedzielewski, Jedrzej Nowosielski, Maciej Radwan, Franciszek Rakowski, Marcin Semeniuk, Ewa Szczurek, Jakub Zielinski, Jan Kisielewski, Barbara Pabjan, Holger Kirsten, Yuri Kheifetz, Markus Scholz, Przemysław Biecek, Marcin Bodych, Maciej Filinski, Radoslaw Idzikowski, Tyll Krueger, Tomasz Ozanski, Johannes Bracher, Sebastian Funk
Predictive performance of multi-model ensemble forecasts of COVID-19 across European nations. eLife 12 (2023)
Ben S Cooper, Stephanie Evans, Yalda Jafari, Thi Mui Pham, Yin Mo, Cherry Lim, Mark G Pritchard, Diane Pople, Victoria Hall, James Stimson, David W Eyre, Jonathan M Read, Christl A Donnelly, Peter Horby, Conall Watson, Sebastian Funk, Julie V Robotham, Gwenan M Knight
The burden and dynamics of hospital-acquired SARS-CoV-2 in England. Nature (2023)
Christopher I Jarvis, Amy Gimma, Flavio Finger, Tim P Morris, Jennifer A Thompson, Olivier le Polain de Waroux, W John Edmunds, Sebastian Funk, Thibaut Jombart
Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics. PLoS computational biology 18 (5) (2022)
Estee Y Cramer, Evan L Ray, Velma K Lopez, Johannes Bracher, Andrea Brennen, Alvaro J Castro Rivadeneira, Aaron Gerding, Tilmann Gneiting, Katie H House, Yuxin Huang, Dasuni Jayawardena, Abdul H Kanji, Ayush Khandelwal, Khoa Le, Anja Mühlemann, Jarad Niemi, Apurv Shah, Ariane Stark, Yijin Wang, Nutcha Wattanachit, Martha W Zorn, Youyang Gu, Sansiddh Jain, Nayana Bannur, Ayush Deva, Mihir Kulkarni, Srujana Merugu, Alpan Raval, Siddhant Shingi, Avtansh Tiwari, Jerome White, Neil F Abernethy, Spencer Woody, Maytal Dahan, Spencer J Fox, Kelly Gaither, Michael Lachmann, Lauren Ancel Meyers, James G Scott, Mauricio Tec, Ajitesh Srivastava, Glover E George, Jeffrey C Cegan, Ian D Dettwiller, William P England, Matthew W Farthing, Robert H Hunter, Brandon Lafferty, Igor Linkov, Michael L Mayo, Matthew D Parno, Michael A Rowland, Benjamin D Trump, Yanli Zhang-James, Samuel Chen, Stephen V Faraone, Jonathan Hess, Christopher P Morley, Asif Salekin, Dongliang Wang, Sabrina M Corsetti, Thomas M Baer, Marisa C Eisenberg, Karl Falb, Yitao Huang, Emily T Martin, Ella McCauley, Robert L Myers, Tom Schwarz, Daniel R Sheldon, Graham Casey Gibson, Rose Yu, Liyao Gao, Yian Ma, Dongxia Wu, Xifeng Yan, Xiaoyong Jin, Yu-Xiang Wang, YangQuan Chen, Lihong Guo, Yanting Zhao, Quanquan Gu, Jinghui Chen, Lingxiao Wang, Pan Xu, Weitong Zhang, Difan Zou, Hannah Biegel, Joceline Lega, Steve McConnell, V P Nagraj, Stephanie L Guertin, Christopher Hulme-Lowe, Stephen D Turner, Yunfeng Shi, Xuegang Ban, Robert Walraven, Qi-Jun Hong, Stanley Kong, Axel van de Walle, James A Turtle, Michal Ben-Nun, Steven Riley, Pete Riley, Ugur Koyluoglu, David DesRoches, Pedro Forli, Bruce Hamory, Christina Kyriakides, Helen Leis, John Milliken, Michael Moloney, James Morgan, Ninad Nirgudkar, Gokce Ozcan, Noah Piwonka, Matt Ravi, Chris Schrader, Elizabeth Shakhnovich, Daniel Siegel, Ryan Spatz, Chris Stiefeling, Barrie Wilkinson, Alexander Wong, Sean M Cavany, Guido España, Sean M Moore, Rachel J Oidtman, T Alex Perkins, David Kraus, Andrea Kraus, Zhifeng Gao, Jiang Bian, Wei Cao, Juan M Lavista Ferres, Chaozhuo Li, Tie-Yan Liu, Xing Xie, Shun Zhang, Shun Zheng, Alessandro Vespignani, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Ana Pastore Y Piontti, Xinyue Xiong, Andrew Zheng, Jackie Baek, Vivek Farias, Andreea Georgescu, Retsef Levi, Deeksha Sinha, Joshua Wilde, Georgia Perakis, Mohammed Amine Bennouna, David Nze-Ndong, Divya Singhvi, Ioannis Spantidakis, Leann Thayaparan, Asterios Tsiourvas, Arnab Sarker, Ali Jadbabaie, Devavrat Shah, Nicolas Della Penna, Leo Anthony Celi, Saketh Sundar, Russ Wolfinger, Dave Osthus, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dean Karlen, Matt Kinsey, Luke C Mullany, Kaitlin Rainwater-Lovett, Lauren Shin, Katharine Tallaksen, Shelby Wilson, Elizabeth C Lee, Juan Dent Hulse, Kyra H Grantz, Alison L Hill, Joshua Kaminsky, Kathryn Kaminsky, Lindsay T Keegan, Stephen A Lauer, Joseph Chadi Lemaitre, Justin Lessler, Hannah R Meredith, Javier Perez-Saez, Sam Shah, Claire P Smith, Shaun A Truelove, Josh Wills, Maximilian Marshall, Lauren Gardner, Kristen Nixon, John C Burant, Lily Wang, Lei Gao, Zhiling Gu, Myungjin Kim, Xinyi Li, Guannan Wang, Yueying Wang, Shan Yu, Robert C Reiner, Ryan Barber, Emmanuela Gakidou, Simon I Hay, Steve Lim, Christopher J L Murray, David Pigott, Heidi L Gurung, Prasith Baccam, Steven A Stage, Bradley T Suchoski, B Aditya Prakash, Bijaya Adhikari, Jiaming Cui, Alexander Rodríguez, Anika Tabassum, Jiajia Xie, Pınar Keskinocak, John Asplund, Arden Baxter, Buse Eylul Oruc, Nicoleta Serban, Sercan O Arik, Mike Dusenberry, Arkady Epshteyn, Elli Kanal, Long T Le, Chun-Liang Li, Tomas Pfister, Dario Sava, Rajarishi Sinha, Thomas Tsai, Nathanael C Yoder, Jinsung Yoon, Leyou Zhang, Sam Abbott, Nikos I Bosse, Sebastian Funk, Joel Hellewell, Sophie R Meakin, Katharine Sherrat, Mingyuan Zhou, Rahi Kalantari, Teresa K Yamana, Sen Pei, Jeffrey L Shaman, Michael Lingzhi Li, Dimitris Bertsimas, Omar Skali Lami, Saksham Soni, Hamza Tazi Bouardi, Turgay Ayer, Madeline Adee, Jagpreet Chhatwal, Ozden O Dalgic, Mary A Ladd, Benjamin P Linas, Peter Mueller, Jade Xiao, Yuanjia Wang, Qinxia Wang, Shanghong Xie, Donglin Zeng, Alden Green, Jacob Bien, Logan Brooks, Addison J Hu, Maria Jahja, Daniel J McDonald, Balasubramanian Narasimhan, Collin A Politsch, Samyak Rajanala, Aaron Rumack, Noah Simon, Ryan J Tibshirani, Rob Tibshirani, Valerie Ventura, Larry Wasserman, Eamon B O'Dea, John M Drake, Robert Pagano, Quoc T Tran, Lam Si Tung Ho, Huong Huynh, Jo W Walker, Rachel B Slayton, Michael A Johansson, Matthew Biggerstaff, Nicholas G Reich
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States. Proceedings of the National Academy of Sciences of the United States of America 119 (15) (2022)
Sang Woo Park, Benjamin M Bolker, Sebastian Funk, Charlotte Jessica E Metcalf, Joshua S Weitz, Bryan T Grenfell, Jonathan Dushoff
The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants. Journal of the Royal Society, Interface 19 (191) (2022)
Akira Endo 遠藤彰, Hiroaki Murayama, Sam Abbott, Ruwan Ratnayake, Carl A B Pearson, W John Edmunds, Elizabeth Fearon, Sebastian Funk
Heavy-tailed sexual contact networks and monkeypox epidemiology in the global outbreak, 2022. Science (New York, N.Y.) 378 (6615) (2022)
Johannes Bracher, Daniel Wolffram, Jannik Deuschel, Konstantin Görgen, Jakob L Ketterer, Alexander Ullrich, Sam Abbott, Maria Vittoria Barbarossa, Dimitris Bertsimas, Sangeeta N Bhatia, Marcin Bodych, Nikos I Bosse, Jan Pablo Burgard, Lauren A Castro, Geoffrey Fairchild, Jochen Fiedler, Jan Fuhrmann, Sebastian Funk, Anna Gambin, Krzysztof Gogolewski, Stefan Heyder, Thomas Hotz, Yuri Kheifetz, Holger Kirsten, Tyll Krueger, Ekaterina Krymova, Neele Leithäuser, Michael Lingzhi Li, Jan H Meinke, Błażej Miasojedow, Isaac J Michaud, Jan Mohring, Pierre Nouvellet, Jedrzej M Nowosielski, Tomasz Ozanski, Maciej Radwan, Franciszek Rakowski, Markus Scholz, Saksham Soni, Ajitesh Srivastava, Tilmann Gneiting, Melanie Schienle
National and subnational short-term forecasting of COVID-19 in Germany and Poland during early 2021. Communications medicine 2 (1) (2022)
Nikos I Bosse, Sam Abbott, Johannes Bracher, Habakuk Hain, Billy J Quilty, Mark Jit, null null, Edwin Van Leeuwen, Anne Cori, Sebastian Funk
Comparing human and model-based forecasts of COVID-19 in Germany and Poland. PLoS computational biology 18 (9) (2022)
Akira Endo 遠藤彰, null null, Mitsuo Uchida, Yang Liu 刘扬, Katherine E Atkins, Adam J Kucharski, Sebastian Funk
Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. Proceedings of the National Academy of Sciences of the United States of America 119 (37) (2022)
William S Hart, Sam Abbott, Akira Endo 遠藤彰, Joel Hellewell, Elizabeth Miller, Nick Andrews, Philip K Maini, Sebastian Funk, Robin N Thompson
Inference of the SARS-CoV-2 generation time using UK household data. eLife 11 (2022)
Amy Gimma, James D Munday, Kerry L M Wong, Pietro Coletti, Kevin van Zandvoort, Kiesha Prem, null null, Petra Klepac, G James Rubin, Sebastian Funk, W John Edmunds, Christopher I Jarvis
Changes in social contacts in England during the COVID-19 pandemic between March 2020 and March 2021 as measured by the CoMix survey: A repeated cross-sectional study. PLoS medicine 19 (3) (2022)
Akira Endo 遠藤彰, null null, Quentin J Leclerc, Gwenan Mary Knight, Graham F Medley, Katherine E Atkins, Sebastian Funk, Adam J Kucharski
Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome open research 5 (2021)
Alexis Robert, Sebastian Funk, Adam J Kucharski
o2geosocial : Reconstructing who-infected-whom from routinely collected surveillance data. F1000Research 10 (2021)
Nicholas G Davies, Sam Abbott, Rosanna C Barnard, Christopher I Jarvis, Adam J Kucharski, James D Munday, Carl A B Pearson, Timothy W Russell, Damien C Tully, Alex D Washburne, Tom Wenseleers, Amy Gimma, William Waites, Kerry L M Wong, Kevin van Zandvoort, Justin D Silverman, null null, null null, Karla DiazOrdaz, Ruth H Keogh, Rosalind M M Eggo, Sebastian Funk, Mark Jit, Katherine E Atkins, W John Edmunds
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.) 372 (6538) (2021)
Alexis Robert, Sebastian Funk, Adam J Kucharski
o2geosocial : Reconstructing who-infected-whom from routinely collected surveillance data. F1000Research 10 (2021)
Oliver J Brady, Adam J Kucharski, Sebastian Funk, Yalda Jafari, Marnix Van Loock, Guillermo Herrera-Taracena, Joris Menten, W John Edmunds, Shuzhen Sim, Lee-Ching Ng, Stéphane Hué, Martin L Hibberd
Case-area targeted interventions (CATI) for reactive dengue control: Modelling effectiveness of vector control and prophylactic drugs in Singapore. PLoS neglected tropical diseases 15 (8) (2021)
Alexis Robert, Sebastian Funk, Adam J Kucharski
o2geosocial : Reconstructing who-infected-whom from routinely collected surveillance data. F1000Research 10 (2021)
Alexis Robert, Sebastian Funk, Adam J Kucharski
o2geosocial : Reconstructing who-infected-whom from routinely collected surveillance data. F1000Research 10 (2021)
Martin Pavelka, Kevin van Zandvoort, Sam Abbott, Katharine Sherrat, Marek Majdan, null null, null null, Pavol Jarčuška, Marek Krajčí, Stefan Flasche, Sebastian Funk
The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia. Science (New York, N.Y.) 372 (6542) (2021)
Sophie R Meakin, Sam Abbott, Nikos I Bosse, James D Munday, Hugo Gruson, Joel Hellewell, Katharine Sherrat, null null, Sebastian Funk
Comparative assessment of methods for short-term forecasts of COVID-19 admissions in England at the local level. medRxiv : the preprint server for health sciences (2021)
Harald S Vöhringer, Theo Sanderson, Matthew Sinnott, Nicola De Maio, Thuy Nguyen, Richard J Goater, Frank Schwach, Ian Harrison, Joel Hellewell, Cristina V Ariani, Sonia Gonçalves, David K Jackson, Ian Johnston, Alexander W Jung, Callum Saint, John Sillitoe, Maria Suciu, Nick Goldman, Jasmina Panovska-Griffiths, null null, null null, Ewan Birney, Erik M Volz, Sebastian Funk, Dominic P Kwiatkowski, Meera Chand, Iñigo Martincorena, Jeffrey C Barrett, Moritz Gerstung
Genomic reconstruction of the SARS-CoV-2 epidemic in England. Nature (2021)
Johannes Bracher, Daniel Wolffram, Jannik Deuschel, Konstantin Görgen, Jakob L Ketterer, Alexander Ullrich, S Abbott, M V Barbarossa, D Bertsimas, Sangeeta N Bhatia, Marcin Bodych, Nikos I Bosse, Jan Pablo Burgard, Lauren A Castro, Geoffrey Fairchild, J Fuhrmann, Sebastian Funk, Krzysztof Gogolewski, Quanquan Gu, Stefan Heyder, T Hotz, Y Kheifetz, Holger Kirsten, T Krueger, Ekaterina Krymova, Michael Lingzhi Li, Jan H Meinke, Isaac J Michaud, K Niedzielewski, Tomasz Ożański, F Rakowski, Markus Scholz, Saksham Soni, Ajitesh Srivastava, Jakub Zielinski, D Zou, T Gneiting, Melanie Schienle, null null
A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave. Nature communications 12 (1) (2021)
Akira Endo 遠藤彰, Mitsuo Uchida, Naoki Hayashi, Yang Liu, Katherine E Atkins, Adam J Kucharski, Sebastian Funk
Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. Proceedings of the National Academy of Sciences of the United States of America 118 (46) (2021)
James D Munday, Katharine Sherratt, Sophie Meakin, Akira Endo, Carl A B Pearson, Joel Hellewell, Sam Abbott, Nikos I Bosse, null null, Katherine E Atkins, Jacco Wallinga, W John Edmunds, Albert Jan van Hoek, Sebastian Funk
Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. Nature communications 12 (1) (2021)
Alasdair D Henderson, Mike Kama, Maite Aubry, Stephane Hue, Anita Teissier, Taina Naivalu, Vinaisi D Bechu, Jimaima Kailawadoko, Isireli Rabukawaqa, Aalisha Sahukhan, Martin Lloyd Hibberd, Eric James Nilles, Sebastian Funk, Jimmy Whitworth, Conall H Watson, Colleen L Lau, W John Edmunds, Van-Mai Cao-Lormeau, Adam J Kucharski
Interactions between timing and transmissibility explain diverse flavivirus dynamics in Fiji. Nature communications 12 (1) (2021)
Jamie Bedson, Laura A Skrip, Danielle Pedi, Sharon Abramowitz, Simone E Carter, Mohamed F Jalloh, Sebastian Funk, Nina H Gobat, Tamara Giles-Vernick, Gerardo Chowell, João Rangel de Almeida, Rania Elessawi, Samuel V Scarpino, Ross A Hammond, Sylvie Briand, Joshua M Epstein, Laurent Hébert-Dufresne, Benjamin M Althouse
A review and agenda for integrated disease models including social and behavioural factors. Nature human behaviour 5 (7) (2021)
Sanjin Musa, Katrine Bach Habersaat, Cath Jackson, Aida Kulo, Emilija Primorac, Mirsad Smjecanin, Sebastian Funk
Tailoring Immunization Programmes: using patient file data to explore vaccination uptake and associated factors. Human vaccines & immunotherapeutics 17 (1) (2020)
Quentin J Leclerc, Naomi M Fuller, Lisa E Knight, null null, Sebastian Funk, Gwenan Mary Knight
What settings have been linked to SARS-CoV-2 transmission clusters? Wellcome open research 5 (2020)
Akira Endo 遠藤彰, null null, Sam Abbott, Adam J Kucharski, Sebastian Funk
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. Wellcome open research 5 (2020)
Raphaëlle Métras, W John Edmunds, Chouanibou Youssouffi, Laure Dommergues, Guillaume Fournié, Anton Camacho, Sebastian Funk, Eric Cardinale, Gilles Le Godais, Soihibou Combo, Laurent Filleul, Hassani Youssouf, Marion Subiros
Estimation of Rift Valley fever virus spillover to humans during the Mayotte 2018-2019 epidemic. Proceedings of the National Academy of Sciences of the United States of America 117 (39) (2020)
Akira Endo 遠藤彰, null null, Sam Abbott, Adam J Kucharski, Sebastian Funk
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. Wellcome open research (2020)
Quentin J Leclerc, Naomi M Fuller, Lisa E Knight, null null, Sebastian Funk, Gwenan Mary Knight
What settings have been linked to SARS-CoV-2 transmission clusters? Wellcome open research (2020)
Adam J Kucharski, Sebastian Funk, Rosalind M M Eggo
The COVID-19 response illustrates that traditional academic reward structures and metrics do not reflect crucial contributions to modern science. PLoS biology 18 (10) (2020)
Jon C Emery, Timothy W Russell, Yang Liu, Joel Hellewell, Carl Ab Pearson, null null, Gwenan Mary Knight, Rosalind M Eggo, Adam J Kucharski, Sebastian Funk, Stefan Flasche, Rein M G J Houben
The contribution of asymptomatic SARS-CoV-2 infections to transmission on the Diamond Princess cruise ship. eLife 9 (2020)
Yang Liu, null null, Sebastian Funk, Stefan Flasche
The contribution of pre-symptomatic infection to the transmission dynamics of COVID-2019. Wellcome open research 5 (2020)
Thibaut Jombart, Kevin van Zandvoort, Timothy W Russell, Christopher I Jarvis, Amy Gimma, Sam Abbott, Sam Clifford, Sebastian Funk, Hamish Gibbs, Yang Liu, Carl A B Pearson, Nikos I Bosse, null null, Rosalind M Eggo, Adam J Kucharski, W John Edmunds
Inferring the number of COVID-19 cases from recently reported deaths. Wellcome open research 5 (2020)
Sam Abbott, Joel Hellewell, James D Munday, null null, Sebastian Funk
The transmissibility of novel Coronavirus in the early stages of the 2019-20 outbreak in Wuhan: Exploring initial point-source exposure sizes and durations using scenario analysis. Wellcome open research 5 (2020)
Akira Endo 遠藤彰, null null, Sam Abbott, Adam J Kucharski, Sebastian Funk
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. Wellcome open research (2020)
Katelyn M Gostic, Lauren McGough, Edward B Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A Hay, Pablo De Salazar, Joel Hellewell, Sophie Meakin, James D Munday, Nikos I Bosse, Katharine Sherrat, Robin N Thompson, Laura F White, Jana Sanne Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah E Cobey
Practical considerations for measuring the effective reproductive number, Rt. PLoS computational biology 16 (12) (2020)
Gwenan Mary Knight, Mirko Zimic, Sebastian Funk, Robert H Gilman, Jon S Friedland, Louis Grandjean
The relative fitness of drug-resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. Journal of the Royal Society, Interface 15 (143) (2019)
Sebastian Funk, Jennifer K Knapp, Emmaculate Lebo, Susan E Reef, Alya J Dabbagh, Katrina Kretsinger, Mark Jit, W John Edmunds, Peter M Strebel
Combining serological and contact data to derive target immunity levels for achieving and maintaining measles elimination. BMC medicine 17 (1) (2019)
Sebastian Funk, Anton Camacho, Adam J Kucharski, Rachel Lowe, Rosalind M M Eggo, W John Edmunds
Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15. PLoS computational biology 15 (2) (2019)
Akira Endo 遠藤彰, Mitsuo Uchida, Adam J Kucharski, Sebastian Funk
Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15. PLoS computational biology 15 (12) (2019)
Nuno Rodrigues Faria, Moritz U G Kraemer, Sarah Catherine Hill, Jaqueline Góes de Jesus, Renato Santana de Aguiar, Felipe Campos de Melo Iani, Joilson Xavier, J Quick, Louis du Plessis, Simon Dellicour, J Thézé, R D O Carvalho, Guy Baele, C-H Wu, P P Silveira, M B Arruda, M A Pereira, G C Pereira, Paul S Wikramaratna, U Obolski, Leandro Abade, T I Vasylyeva, M Giovanetti, D Yi, Daniel J Weiss, G R William Wint, F M Shearer, Sebastian Funk, B Nikolay, Vagner Fonseca, Talita Émile Ribeiro Adelino, M A A Oliveira, M V F Silva, Lívia Sacchetto, P O Figueiredo, Izabela Maurício de Rezende, Érica Munhoz de Mello, R F C Said, D A Santos, Marcela Lencine Ferraz, M G Brito, L F Santana, Mariane Talon de Menezes, Rodrigo M Brindeiro, Amilcar Tanuri, F C P Dos Santos, M S Cunha, J S Nogueira, I M Rocco, Antonio Charlys da Costa, Shirley Vasconcelos Komninakis, Vasco Ariston de Carvalho Azevedo, A O Chieppe, E S M Araujo, M C L Mendonça, C C Dos Santos, C D Dos Santos, A M Mares-Guia, R M R Nogueira, Patricia C de Sequeira, Ricardo Gadelha de Abreu, Márcio Henrique de Oliveira Garcia, A L Abreu, O Okumoto, Erna Geessien Kroon, C F C de Albuquerque, K Lewandowski, S T Pullan, M Carroll, T de Oliveira, Ester Cerdeira Sabino, R P Souza, Marc A Suchard, Philippe Lemey, G S Trindade, B P Drumond, A M B Filippis, N J Loman, S Cauchemez, Luiz Carlos Junior Alcantara, Oliver George Pybus
Genomic and epidemiological monitoring of yellow fever virus transmission potential. Science (New York, N.Y.) 361 (6405) (2018)
Adam J Kucharski, Mike Kama, Conall H Watson, Maite Aubry, Sebastian Funk, Alasdair D Henderson, Oliver J Brady, Jessica Vanhomwegen, Jean-Claude Manuguerra, Colleen L Lau, W John Edmunds, John Aaskov, Eric James Nilles, Van-Mai Cao-Lormeau, Stéphane Hué, Martin L Hibberd
Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji. eLife 7 (2018)
Francesco Checchi, Sebastian Funk, Daniel Chandramohan, François Chappuis, Daniel T Haydon
The impact of passive case detection on the transmission dynamics of gambiense Human African Trypanosomiasis. PLoS neglected tropical diseases 12 (4) (2018)
Kathleen M O'Reilly, Rachel Lowe, W John Edmunds, Philippe Mayaud, Adam Kucharski, Rosalind M M Eggo, Sebastian Funk, Deepit Bhatia, Kamran Khan, Moritz U G Kraemer, Annelies Wilder-Smith, Laura C Rodrigues, Patricia Brasil, Eduardo Massad, Thomas Jaenisch, Simon Cauchemez, Oliver J Brady, Laith Yakob
Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis. BMC medicine 16 (1) (2018)
Sebastian Funk, Iza Ciglenecki, Amanda Tiffany, Etienne Gignoux, Anton Camacho, Rosalind M Eggo, Adam J Kucharski, W John Edmunds, Josephus Bolongei, Phillip Azuma, Peter Clement, Tamba S Alpha, Esther Sterk, Barbara Telfer, Gregory Engel, Lucy Anne Parker, Motoi Suzuki, Nico Heijenberg, Bruce Reeder
The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 372 (1721) (2017)
Sebastian Funk, Adam J Kucharski, Anton Camacho, Rosalind M Eggo, Laith Yakob, Lawrence M Murray, W John Edmunds
Comparative Analysis of Dengue and Zika Outbreaks Reveals Differences by Setting and Virus. PLoS neglected tropical diseases 10 (12) (2016)

Sebastian Funk.css-eqlu8i{font-size:small;padding-left:4px;} (S Funk)

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Sebastian Funk (S Funk)