Takehiko Itoh

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 35

Top Topics

Escherichia Coli

Dna Methylation

Arabidopsis Thaliana

Top Venues

Molecular biology and evolution

Scientific data

Communications biology

Genome biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Ryo Hatashima, Ismael A Kimirei, Benedicto B Kashindye, Takehiko Itoh, Masato Nikaido
Severe Bottleneck Impacted the Genomic Structure of Egg-Eating Cichlids in Lake Victoria. Molecular biology and evolution 41 (6) (2024)
Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Ryo Hatashima, Ismael A Kimirei, Benedicto B Kashindye, Takehiko Itoh, Masato Nikaido
Severe Bottleneck Impacted the Genomic Structure of Egg-Eating Cichlids in Lake Victoria. Molecular biology and evolution (2024)
Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Ryo Hatashima, Ismael A Kimirei, Benedicto B Kashindye, Takehiko Itoh, Masato Nikaido
Severe Bottleneck Impacted the Genomic Structure of Egg-Eating Cichlids in Lake Victoria. Molecular biology and evolution 41 (6) (2024)
Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Ryo Hatashima, Ismael A Kimirei, Benedicto B Kashindye, Takehiko Itoh, Masato Nikaido
Severe Bottleneck Impacted the Genomic Structure of Egg-Eating Cichlids in Lake Victoria. Molecular biology and evolution 41 (6) (2024)
Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Ryo Hatashima, Ismael A Kimirei, Benedicto B Kashindye, Takehiko Itoh, Masato Nikaido
Severe Bottleneck Impacted the Genomic Structure of Egg-Eating Cichlids in Lake Victoria. Molecular biology and evolution 41 (6) (2024)
Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Ryo Hatashima, Ismael A Kimirei, Benedicto B Kashindye, Takehiko Itoh, Masato Nikaido
Severe Bottleneck Impacted the Genomic Structure of Egg-Eating Cichlids in Lake Victoria. Molecular biology and evolution 41 (6) (2024)
Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh
Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes. Scientific data 10 (1) (2023)
Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh
Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes. Scientific data 10 (1) (2023)
Hiroyuki Tanaka, Tatsuki Hori, Shohei Yamamoto, Atsushi Toyoda, Kentaro Yano, Kyoko Yamane, Takehiko Itoh
Haplotype-resolved chromosomal-level assembly of wasabi (Eutrema japonicum) genome. Scientific data 10 (1) (2023)
Minoru Moriyama, Yudai Nishide, Atsushi Toyoda, Takehiko Itoh, Takema Fukatsu
Complete genomes of mutualistic bacterial co-symbionts " Candidatus Sulcia muelleri" and " Candidatus Nasuia deltocephalinicola" of the rice green leafhopper Nephotettix cincticeps . Microbiology resource announcements (2023)
Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh
Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes. Scientific data 10 (1) (2023)
Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh
Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes. Scientific data 10 (1) (2023)
Takahiro Yamabe, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh
Chromosomal-level genome assembly of the coffee bee hawk moth reveals the evolution of chromosomes and the molecular basis of distinct phenotypes. Genome biology and evolution (2023)
Shun Ouchi, Rei Kajitani, Takehiko Itoh
GreenHill: a de novo chromosome-level scaffolding and phasing tool using Hi-C. Genome biology 24 (1) (2023)
Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh
Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes. Scientific data 10 (1) (2023)
Takeaki Taniguchi, Miki Okuno, Takahiro Shinoda, Fumiya Kobayashi, Kazuki Takahashi, Hideaki Yuasa, Yuta Nakamura, Hiroyuki Tanaka, Rei Kajitani, Takehiko Itoh
GINGER: An integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level. DNA research : an international journal for rapid publication of reports on genes and genomes (2023)
Issei Nakazato, Miki Okuno, Takehiko Itoh, Nobuhiro Tsutsumi, Shin-Ichi Arimura
Characterization and development of a plastid genome base editor, ptpTALECD. The Plant journal : for cell and molecular biology (2023)
Masa-Aki Yoshida, Kazuki Hirota, Junichi Imoto, Miki Okuno, Hiroyuki Tanaka, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Kazuho Ikeo, Takenori Sasaki, Davin H E Setiamarga
Gene Recruitments and Dismissals in the Argonaut Genome Provide Insights into Pelagic Lifestyle Adaptation and Shell-like Eggcase Reacquisition. Genome biology and evolution 14 (11) (2022)
Miki Okuno, Shusei Mizushima, Asato Kuroiwa, Takehiko Itoh
Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly. Genome biology and evolution 13 (11) (2022)
Yasuhiko Chikami, Miki Okuno, Atsushi Toyoda, Takehiko Itoh, Teruyuki Niimi
Evolutionary History of Sexual Differentiation Mechanism in Insects. Molecular biology and evolution 39 (7) (2022)
Takumi Kamiyama, Yuko Shimada-Niwa, Hiroyuki Tanaka, Minami Katayama, Takayoshi Kuwabara, Hitoha Mori, Akari Kunihisa, Takehiko Itoh, Atsushi Toyoda, Ryusuke Niwa
Whole-genome sequencing analysis and protocol for RNA interference of the endoparasitoid wasp Asobara japonica. DNA research : an international journal for rapid publication of reports on genes and genomes 29 (4) (2022)
Shinya Komata, Rei Kajitani, Takehiko Itoh, Haruhiko Fujiwara
Genomic architecture and functional unit of mimicry supergene in female limited Batesian mimic Papilio butterflies. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1856) (2022)
Miho Terao, Yuya Ogawa, Shuji Takada, Rei Kajitani, Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takehiko Itoh, Atsushi Toyoda, Tomohiro Kono, Takamichi Jogahara, Shusei Mizushima, Asato Kuroiwa
Turnover of mammal sex chromosomes in the Sry -deficient Amami spiny rat is due to male-specific upregulation of Sox9 . Proceedings of the National Academy of Sciences of the United States of America 119 (49) (2022)
Issei Nakazato, Miki Okuno, Chang Zhou, Takehiko Itoh, Nobuhiro Tsutsumi, Mizuki Takenaka, Shin-Ichi Arimura
Targeted base editing in the mitochondrial genome of Arabidopsis thaliana . Proceedings of the National Academy of Sciences of the United States of America 119 (20) (2022)
Guillem Ylla, Taro Nakamura, Takehiko Itoh, Rei Kajitani, Atsushi Toyoda, Sayuri Tomonari, Tetsuya Bando, Yoshiyasu Ishimaru, Takahito Watanabe, Masao Fuketa, Yuji Matsuoka, Austen A Barnett, Sumihare Noji, Taro Mito, Cassandra G Extavour
Insights into the genomic evolution of insects from cricket genomes. Communications biology 4 (1) (2021)
Michiharu Nakano, Hideki Hirakawa, Eigo Fukai, Atsushi Toyoda, Rei Kajitani, Yohei Minakuchi, Takehiko Itoh, Yohei Higuchi, Toshiaki Kozuka, Hidemasa Bono, Kenta Shirasawa, Ippei Shiraiwa, Katsuhiko Sumitomo, Tamotsu Hisamatsu, Michio Shibata, Sachiko N Isobe, Kenji Taniguchi, Makoto Kusaba
A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum. Communications biology 4 (1) (2021)
Masatoshi Miyakoshi, Haruna Okayama, Maxence Lejars, Takeshi Kanda, Yuki Tanaka, Kaori Itaya, Miki Okuno, Takehiko Itoh, Noritaka Iwai, Masaaki Wachi
Mining RNA-seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in Escherichia coli. Molecular microbiology (2021)
Yukako Katsura, Toshimichi Ikemura, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Mitsuaki Ogata, Ikuo Miura, Kennosuke Wada, Yoshiko Wada, Yoko Satta
Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency. Life science alliance 4 (5) (2021)
Issei Nakazato, Miki Okuno, Hiroshi Yamamoto, Yoshiko Tamura, Takehiko Itoh, Toshiharu Shikanai, Hideki Takanashi, Nobuhiro Tsutsumi, Shin-Ichi Arimura
Targeted base editing in the plastid genome of Arabidopsis thaliana. Nature plants 7 (7) (2021)
Rei Kajitani, Hideki Noguchi, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Miki Okuno, Atsushi Toyoda, Tomomi Kuwahara, Tetsuya Hayashi, Takehiko Itoh
MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features. Nucleic acids research (2021)
Mariko Takeuchi, Hirokazu Kuwahara, Takumi Murakami, Kazuki Takahashi, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Moriya Ohkuma, Yuichi Hongoh
Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut. The ISME journal 14 (9) (2020)
Yong-Woon Han, Rei Kajitani, Hiroya Morimoto, Maierdan Palihati, Yumiko Kurokawa, Rie Ryusui, Bilge Argunhan, Hideo Tsubouchi, Fumiyoshi Abe, Susumu Kajiwara, Hiroshi Iwasaki, Takehiko Itoh
Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench. Microbiology resource announcements 9 (47) (2020)
Takayuki Enomoto, Hidefumi Nishida, Tetsuo Iwata, Akito Fujita, Kanako Nakayama, Takahiro Kashiwagi, Yasue Hatanaka, Hiro Kondo, Rei Kajitani, Takehiko Itoh, Makoto Ohmoto, Ichiro Matsumoto, Junji Hirota
Bcl11b controls odorant receptor class choice in mice. Communications biology 2 (2019)
Takayuki Enomoto, Hidefumi Nishida, Tetsuo Iwata, Akito Fujita, Kanako Nakayama, Takahiro Kashiwagi, Yasue Hatanaka, Hiro Kondo, Rei Kajitani, Takehiko Itoh, Makoto Ohmoto, Ichiro Matsumoto, Junji Hirota
Erratum: Author Correction: Bcl11b controls odorant receptor class choice in mice. Communications biology 2 (2019)
Rei Kajitani, Dai Yoshimura, Miki Okuno, Yohei Minakuchi, Hiroshi Kagoshima, Asao Fujiyama, Kaoru Kubokawa, Yuji Kohara, Atsushi Toyoda, Takehiko Itoh
Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions. Nature communications 10 (1) (2019)