Tamir Tuller

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 31

Top Topics

Gene Expression

Antibiotic Resistance Genes

Top Venues

NPJ systems biology and applications

PLoS computational biology

Journal of the Royal Society, Interface

NPJ biofilms and microbiomes

This page only lists publications with an associated author ORCID identifier.

Publications

Shaked Bergman, Tamir Tuller
Strong association between genomic 3D structure and CRISPR cleavage efficiency. PLoS computational biology 20 (6) (2024)
Nicolas Lynn, Tamir Tuller
Detecting and understanding meaningful cancerous mutations based on computational models of mRNA splicing. NPJ systems biology and applications 10 (1) (2024)
Nicolas Lynn, Tamir Tuller
Detecting and understanding meaningful cancerous mutations based on computational models of mRNA splicing. NPJ systems biology and applications 10 (1) (2024)
Shaked Bergman, Tamir Tuller
Strong association between genomic 3D structure and CRISPR cleavage efficiency. PLoS computational biology 20 (6) (2024)
Shaked Bergman, Tamir Tuller
Codon usage and expression-based features significantly improve prediction of CRISPR efficiency. NPJ systems biology and applications 10 (1) (2024)
Shaked Bergman, Tamir Tuller
Codon usage and expression-based features significantly improve prediction of CRISPR efficiency. NPJ systems biology and applications 10 (1) (2024)
Nicolas Lynn, Tamir Tuller
Detecting and understanding meaningful cancerous mutations based on computational models of mRNA splicing. NPJ systems biology and applications 10 (1) (2024)
Shaked Bergman, Tamir Tuller
Strong association between genomic 3D structure and CRISPR cleavage efficiency. PLoS computational biology 20 (6) (2024)
Shaked Bergman, Tamir Tuller
Strong association between genomic 3D structure and CRISPR cleavage efficiency. PLoS computational biology 20 (6) (2024)
Nicolas Lynn, Tamir Tuller
Detecting and understanding meaningful cancerous mutations based on computational models of mRNA splicing. NPJ systems biology and applications 10 (1) (2024)
Arup Panda, Tamir Tuller
Determinants of associations between codon and amino acid usage patterns of microbial communities and the environment inferred based on a cross-biome metagenomic analysis. NPJ biofilms and microbiomes 9 (1) (2023)
Arup Panda, Tamir Tuller
Determinants of associations between codon and amino acid usage patterns of microbial communities and the environment inferred based on a cross-biome metagenomic analysis. NPJ biofilms and microbiomes 9 (1) (2023)
Arup Panda, Tamir Tuller
Determinants of associations between codon and amino acid usage patterns of microbial communities and the environment inferred based on a cross-biome metagenomic analysis. NPJ biofilms and microbiomes 9 (1) (2023)
Arup Panda, Tamir Tuller
Determinants of associations between codon and amino acid usage patterns of microbial communities and the environment inferred based on a cross-biome metagenomic analysis. NPJ biofilms and microbiomes 9 (1) (2023)
Tamar Neumann, Tamir Tuller
Modeling the ribosomal small subunit dynamic in Saccharomyces cerevisiae based on TCP-seq data. Nucleic acids research 50 (3) (2022)
Liyam Chitayat Levi, Ido Rippin, Moran Ben Tulila, Rotem Galron, Tamir Tuller
Modulating Gene Expression within a Microbiome Based on Computational Models. Biology 11 (9) (2022)
Rami Katz, Elad Attias, Tamir Tuller, Michael Margaliot
Translation in the cell under fierce competition for shared resources: a mathematical model. Journal of the Royal Society, Interface 19 (197) (2022)
Rami Katz, Elad Attias, Tamir Tuller, Michael Margaliot
Translation in the cell under fierce competition for shared resources: a mathematical model. Journal of the Royal Society, Interface 19 (197) (2022)
Rami Katz, Elad Attias, Tamir Tuller, Michael Margaliot
Translation in the cell under fierce competition for shared resources: a mathematical model. Journal of the Royal Society, Interface 19 (197) (2022)
Rami Katz, Elad Attias, Tamir Tuller, Michael Margaliot
Translation in the cell under fierce competition for shared resources: a mathematical model. Journal of the Royal Society, Interface 19 (197) (2022)
Tal Gutman, Guy Goren, Omri Efroni, Tamir Tuller
Estimating the predictive power of silent mutations on cancer classification and prognosis. NPJ genomic medicine 6 (1) (2021)
Itamar Menuhin-Gruman, Matan Arbel, Niv Amitay, Karin Sionov, Doron Naki, Itai Katzir, Omer Edgar, Shaked Bergman, Tamir Tuller
Evolutionary Stability Optimizer (ESO): A Novel Approach to Identify and Avoid Mutational Hotspots in DNA Sequences While Maintaining High Expression Levels. ACS synthetic biology 11 (3) (2021)
David Shallom, Danny Naiger, Shlomo Weiss, Tamir Tuller
Accelerating Whole-Cell Simulations of mRNA Translation Using a Dedicated Hardware. ACS synthetic biology (2021)
Maya Galili, Tamir Tuller
CSN: unsupervised approach for inferring biological networks based on the genome alone. BMC bioinformatics 21 (1) (2020)
Doron Levin, Tamir Tuller
Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics. PLoS computational biology 16 (7) (2020)
Yonatan Chemla, Michael Peeri, Mathias Luidor Heltberg, Jerry Eichler, Mogens Høgh Jensen, Tamir Tuller, Lital Alfonta
A possible universal role for mRNA secondary structure in bacterial translation revealed using a synthetic operon. Nature communications 11 (1) (2020)
Renana Sabi, Tamir Tuller
Novel insights into gene expression regulation during meiosis revealed by translation elongation dynamics. NPJ systems biology and applications 5 (2019)
Eyal Dafni, Iddo Weiner, Noam Shahar, Tamir Tuller, Iftach Yacoby
Image-Processing Software for High-Throughput Quantification of Colony Luminescence. mSphere 4 (1) (2019)
Yoram Zarai, Tamir Tuller
Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources. PLoS computational biology 14 (4) (2018)
Yoram Zarai, Michael Margaliot, Tamir Tuller
Ribosome flow model with extended objects. Journal of the Royal Society, Interface 14 (135) (2018)
Alon Diament, Anna Feldman, Elisheva Schochet, Martin Kupiec, Yoav Arava, Tamir Tuller
The extent of ribosome queuing in budding yeast. PLoS computational biology 14 (1) (2018)