Tomoaki Nishiyama

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 27

Top Topics

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Top Venues

The New phytologist

Molecular biology and evolution

Scientific reports

DNA research : an international journal for rapid publication of reports on genes and genomes

This page only lists publications with an associated author ORCID identifier.

Publications

Junji Konuma, Tomochika Fujisawa, Tomoaki Nishiyama, Masahiro Kasahara, Tomoko F Shibata, Masafumi Nozawa, Shuji Shigenobu, Atsushi Toyoda, Mitsuyasu Hasebe, Teiji Sota
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles. Molecular biology and evolution 41 (6) (2024)
Yuki Tsuchikane, Misaki Watanabe, Yawako W Kawaguchi, Koichi Uehara, Tomoaki Nishiyama, Hiroyuki Sekimoto, Takashi Tsuchimatsu
Diversity of genome size and chromosome number in homothallic and heterothallic strains of the Closterium peracerosum-strigosum-littorale complex (Desmidiales, Zygnematophyceae, Streptophyta). Journal of phycology (2024)
Yuki Tsuchikane, Misaki Watanabe, Yawako W Kawaguchi, Koichi Uehara, Tomoaki Nishiyama, Hiroyuki Sekimoto, Takashi Tsuchimatsu
Diversity of genome size and chromosome number in homothallic and heterothallic strains of the Closterium peracerosum-strigosum-littorale complex (Desmidiales, Zygnematophyceae, Streptophyta). Journal of phycology 60 (3) (2024)
Junji Konuma, Tomochika Fujisawa, Tomoaki Nishiyama, Masahiro Kasahara, Tomoko F Shibata, Masafumi Nozawa, Shuji Shigenobu, Atsushi Toyoda, Mitsuyasu Hasebe, Teiji Sota
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles. Molecular biology and evolution 41 (6) (2024)
Junji Konuma, Tomochika Fujisawa, Tomoaki Nishiyama, Masahiro Kasahara, Tomoko F Shibata, Masafumi Nozawa, Shuji Shigenobu, Atsushi Toyoda, Mitsuyasu Hasebe, Teiji Sota
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles. Molecular biology and evolution 41 (6) (2024)
Junji Konuma, Tomochika Fujisawa, Tomoaki Nishiyama, Masahiro Kasahara, Tomoko F Shibata, Masafumi Nozawa, Shuji Shigenobu, Atsushi Toyoda, Mitsuyasu Hasebe, Teiji Sota
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles. Molecular biology and evolution 41 (6) (2024)
Yuuki Kobayashi, Tomoko F Shibata, Hideki Hirakawa, Tomoaki Nishiyama, Akiyoshi Yamada, Mitsuyasu Hasebe, Shuji Shigenobu, Masayoshi Kawaguchi
The genome of Lyophyllum shimeji provides insight into the initial evolution of ectomycorrhizal fungal genomes. DNA research : an international journal for rapid publication of reports on genes and genomes 30 (1) (2023)
Yuuki Kobayashi, Tomoko F Shibata, Hideki Hirakawa, Tomoaki Nishiyama, Akiyoshi Yamada, Mitsuyasu Hasebe, Shuji Shigenobu, Masayoshi Kawaguchi
The genome of Lyophyllum shimeji provides insight into the initial evolution of ectomycorrhizal fungal genomes. DNA research : an international journal for rapid publication of reports on genes and genomes 30 (1) (2023)
Hiroyuki Sekimoto, Ayumi Komiya, Natsumi Tsuyuki, Junko Kawai, Naho Kanda, Ryo Ootsuki, Yutaka Suzuki, Atsushi Toyoda, Asao Fujiyama, Masahiro Kasahara, Jun Abe, Yuki Tsuchikane, Tomoaki Nishiyama
A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. The New phytologist 237 (5) (2023)
Yuuki Kobayashi, Tomoko F Shibata, Hideki Hirakawa, Tomoaki Nishiyama, Akiyoshi Yamada, Mitsuyasu Hasebe, Shuji Shigenobu, Masayoshi Kawaguchi
The genome of Lyophyllum shimeji provides insight into the initial evolution of ectomycorrhizal fungal genomes. DNA research : an international journal for rapid publication of reports on genes and genomes (2023)
Hiroyuki Sekimoto, Ayumi Komiya, Natsumi Tsuyuki, Junko Kawai, Naho Kanda, Ryo Ootsuki, Yutaka Suzuki, Atsushi Toyoda, Asao Fujiyama, Masahiro Kasahara, Jun Abe, Yuki Tsuchikane, Tomoaki Nishiyama
A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. The New phytologist 237 (5) (2023)
Hiroyuki Sekimoto, Ayumi Komiya, Natsumi Tsuyuki, Junko Kawai, Naho Kanda, Ryo Ootsuki, Yutaka Suzuki, Atsushi Toyoda, Asao Fujiyama, Masahiro Kasahara, Jun Abe, Yuki Tsuchikane, Tomoaki Nishiyama
A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. The New phytologist 237 (5) (2023)
Hiroyuki Sekimoto, Ayumi Komiya, Natsumi Tsuyuki, Junko Kawai, Naho Kanda, Ryo Ootsuki, Yutaka Suzuki, Atsushi Toyoda, Asao Fujiyama, Masahiro Kasahara, Jun Abe, Yuki Tsuchikane, Tomoaki Nishiyama
A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. The New phytologist (2022)
Shizuka Koshimizu, Naoki Minamino, Tomoaki Nishiyama, Emiko Yoro, Mayuko Sato, Mayumi Wakazaki, Kiminori Toyooka, Kazuo Ebine, Keiko Sakakibara, Takashi Ueda, Kentaro Yano
Phylogenetic distribution and expression pattern analyses identified a divergent basal body assembly protein involved in land plant spermatogenesis. The New phytologist 236 (3) (2022)
Kyoichi Kodama, Mélanie K Rich, Akiyoshi Yoda, Shota Shimazaki, Xiaonan Xie, Kohki Akiyama, Yohei Mizuno, Aino Komatsu, Yi Luo, Hidemasa Suzuki, Hiromu Kameoka, Cyril Libourel, Jean Keller, Keiko Sakakibara, Tomoaki Nishiyama, Tomomi Nakagawa, Kiyoshi Mashiguchi, Kenichi Uchida, Kaori Yoneyama, Yoshikazu Tanaka, Shinjiro Yamaguchi, Masaki Shimamura, Pierre-Marc Delaux, Takahito Nomura, Junko Kyozuka
An ancestral function of strigolactones as symbiotic rhizosphere signals. Nature communications 13 (1) (2022)
Natsu Katayama, Satoshi Koi, Akira Sassa, Tetsuya Kurata, Ryoko Imaichi, Masahiro Kato, Tomoaki Nishiyama
Elevated mutation rates underlie the evolution of the aquatic plant family Podostemaceae. Communications biology 5 (1) (2022)
Atsushi Sadamitsu, Yuya Inoue, Keiko Sakakibara, Hiromi Tsubota, Tomio Yamaguchi, Hironori Deguchi, Tomoaki Nishiyama, Masaki Shimamura
The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RNA editing. Plant molecular biology 107 (4-5) (2021)
Eftychios Frangedakis, Manuel Waller, Tomoaki Nishiyama, Hirokazu Tsukaya, Xia Xu, Yuling Yue, Michelle Tjahjadi, Andika Gunadi, Joyce Van Eck, Fay-Wei Li, Péter Szövényi, Keiko Sakakibara
An Agrobacterium-mediated stable transformation technique for the hornwort model Anthoceros agrestis. The New phytologist 232 (3) (2021)
Kevin Kit Siong Ng, Masaki J Kobayashi, Jeffrey A Fawcett, Masaomi Hatakeyama, Timothy Paape, Chin Hong Ng, Choon Cheng Ang, Lee Hong Tnah, Chai Ting Lee, Tomoaki Nishiyama, Jun Sese, Michael J O'Brien, Dario Copetti, Mohd Noor Mat Isa, Robert Cyril Ong, Mahardika Putra Purba, Iskandar Z Siregar, Sapto Indrioko, Yoshiko Kosugi, Ayako Izuno, Yuji Isagi, Soon Leong Lee, Kentaro K Shimizu
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests. Communications biology 4 (1) (2021)
Fay-Wei Li, Tomoaki Nishiyama, Manuel Waller, Eftychios Frangedakis, Jean Keller, Zheng Li, Noe Fernandez Pozo, Michael S Barker, Tom Bennett, Miguel Angel Blázquez, Shifeng Cheng, Andrew C Cuming, Jan de Vries, Sophie de Vries, Pierre-Marc Delaux, Issa S Diop, C Jill Harrison, Duncan Hauser, Jorge Hernandez-Garcia, Alexander Kirbis, John C Meeks, Isabel Monte, Sumanth K Mutte, Anna Neubauer, Dietmar Quandt, Tanner Robison, Masaki Shimamura, Stefan Andreas Rensing, Juan Carlos Villarreal A, Dolf Weijers, Susann Wicke, Gane Ka-Shu Wong, Keiko Sakakibara, Péter Szövényi
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts. Nature plants 6 (3) (2020)
Songkui Cui, Tomoya Kubota, Tomoaki Nishiyama, Juliane Karine Ishida, Shuji Shigenobu, Tomoko F Shibata, Atsushi Toyoda, Mitsuyasu Hasebe, Ken Shirasu, Satoko Yoshida
Ethylene signaling mediates host invasion by parasitic plants. Science advances 6 (44) (2020)
Huimin Cai, Qiye Li, Xiao-Dong Fang, Ji Li, Nicholas E Curtis, Andreas Altenburger, Tomoko Shibata, Mingji Feng, Taro Maeda, Julie A Schwartz, Shuji Shigenobu, Nina Lundholm, Tomoaki Nishiyama, Huanming Yang, Mitsuyasu Hasebe, Shuaicheng Li, Sidney K Pierce, Jian Wang
A draft genome assembly of the solar-powered sea slug Elysia chlorotica. Scientific data 6 (2019)
Masaki Ishikawa, Mio Morishita, Yohei Higuchi, Shunsuke Ichikawa, Takaaki Ishikawa, Tomoaki Nishiyama, Yukiko Kabeya, Yuji Hiwatashi, Tetsuya Kurata, Minoru Kubo, Shuji Shigenobu, Yosuke Tamada, Yoshikatsu Sato, Mitsuyasu Hasebe
Physcomitrella STEMIN transcription factor induces stem cell formation with epigenetic reprogramming. Nature plants 5 (7) (2019)
Kousho Wakae, Tomoaki Nishiyama, Satoru Kondo, Takashi Izuka, Lusheng Que, Cong Chen, Kina Kase, Kouichi Kitamura, Md Mohiuddin, Zhe Wang, Md Monjurul Ahasan, Mitsuhiro Nakamura, Hiroshi Fujiwara, Tomokazu Yoshizaki, Kazuyoshi Hosomochi, Atsushi Tajima, Tomomi Nakahara, Tohru Kiyono, Masamichi Muramatsu
Keratinocyte differentiation induces APOBEC3A, 3B, and mitochondrial DNA hypermutation. Scientific reports 8 (1) (2018)
Naho Kanda, Machiko Ichikawa, Ayaka Ono, Atsushi Toyoda, Asao Fujiyama, Jun Abe, Yuki Tsuchikane, Tomoaki Nishiyama, Hiroyuki Sekimoto
CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex. Scientific reports 7 (1) (2017)
Chen Li, Yusuke Sako, Akihiro Imai, Tomoaki Nishiyama, Kari Thompson, Minoru Kubo, Yuji Hiwatashi, Yukiko Kabeya, Dale Karlson, Shu-Hsing Wu, Masaki Ishikawa, Takashi Murata, Philip N Benfey, Yoshikatsu Sato, Yosuke Tamada, Mitsuyasu Hasebe
A Lin28 homologue reprograms differentiated cells to stem cells in the moss Physcomitrella patens. Nature communications 8 (2017)
Yoshikatsu Sato, Nagisa Sugimoto, Tadayoshi Hirai, Akihiro Imai, Minoru Kubo, Yuji Hiwatashi, Tomoaki Nishiyama, Mitsuyasu Hasebe
Cells reprogramming to stem cells inhibit the reprogramming of adjacent cells in the moss Physcomitrella patens. Scientific reports 7 (1) (2017)