Kentaro K Shimizu

Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 21

Top Topics

Dna Methylation

Arabidopsis Thaliana

Genome Wide Association Study

Top Venues

Nature communications

The New phytologist

This page only lists publications with an associated author ORCID identifier.

Publications

Jianqiang Sun, Moeko Okada, Toshiaki Tameshige, Rie Shimizu-Inatsugi, Reiko Akiyama, Atsushi J Nagano, Jun Sese, Kentaro K Shimizu
A low-coverage 3' RNA-seq to detect homeolog expression in polyploid wheat. NAR genomics and bioinformatics 5 (3) (2023)
Reiko Akiyama, Takao Goto, Toshiaki Tameshige, Jiro Sugisaka, Ken Kuroki, Jianqiang Sun, Junichi Akita, Masaomi Hatakeyama, Hiroshi Kudoh, Tanaka Kenta, Aya Tonouchi, Yuki Shimahara, Jun Sese, Natsumaro Kutsuna, Rie Shimizu-Inatsugi, Kentaro K Shimizu
Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation. Nature communications 14 (1) (2023)
Yasuhiro Sato, Yuma Takahashi, Chongmeng Xu, Kentaro K Shimizu
Detecting frequency-dependent selection through the effects of genotype similarity on fitness components. Evolution; international journal of organic evolution (2023)
Chongmeng Xu, Yasuhiro Sato, Misako Yamazaki, Marcel Brasser, Matthew A Barbour, Jordi Bascompte, Kentaro K Shimizu
Genome-wide association study of aphid abundance highlights a locus affecting plant growth and flowering in Arabidopsis thaliana . Royal Society open science 10 (8) (2023)
Chow-Lih Yew, Takashi Tsuchimatsu, Rie Shimizu-Inatsugi, Shinsuke Yasuda, Masaomi Hatakeyama, Hiroyuki Kakui, Takuma Ohta, Keita Suwabe, Masao Watanabe, Seiji Takayama, Kentaro K Shimizu
Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility. Nature communications 14 (1) (2023)
Ayako Izuno, Yusuke Onoda, Gaku Amada, Keito Kobayashi, Mana Mukai, Yuji Isagi, Kentaro K Shimizu
Demography and selection analysis of the incipient adaptive radiation of a Hawaiian woody species. PLoS genetics 18 (1) (2022)
Chiara Barbieri, Damián E Blasi, Epifanía Arango-Isaza, Alexandros G Sotiropoulos, Harald Hammarström, Søren Wichmann, Simon J Greenhill, Russell D Gray, Robert Forkel, Balthasar Bickel, Kentaro K Shimizu
A global analysis of matches and mismatches between human genetic and linguistic histories. Proceedings of the National Academy of Sciences of the United States of America 119 (47) (2022)
Alexandros G Sotiropoulos, Epifanía Arango-Isaza, Tomohiro Ban, Chiara Barbieri, Salim Bourras, Christina Cowger, Paweł C Czembor, Roi Ben-David, Amos Dinoor, Simon R Ellwood, Johannes Graf, Koichi Hatta, Marcelo Helguera, Javier Sánchez-Martín, Bruce A McDonald, Alexey I Morgounov, Marion Claudia Müller, Vladimir Shamanin, Kentaro K Shimizu, Taiki Yoshihira, Helen Zbinden, Beat Keller, Thomas Wicker
Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade. Nature communications 13 (1) (2022)
Takehiro Sato, Noboru Adachi, Ryosuke Kimura, Kazuyoshi Hosomichi, Minoru Yoneda, Hiroki Oota, Atsushi Tajima, Atsushi Toyoda, Hideaki Kanzawa-Kiriyama, Hiromi Matsumae, Kae Koganebuchi, Kentaro K Shimizu, Ken-Ichi Shinoda, Tsunehiko Hanihara, Andrzej Weber, Hirofumi Kato, Hajime Ishida
Whole-Genome Sequencing of a 900-Year-Old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan. Genome biology and evolution 13 (9) (2022)
Reiko Akiyama, Roman V Briskine, Xiangchao Gan, Masaomi Hatakeyama, Hiroshi Kudoh, Heidi E L Lischer, Jun Sese, Kentaro K Shimizu, Rie Shimizu-Inatsugi, Jianqiang Sun
Corrigendum. The New phytologist 231 (1) (2021)
Yasuhiro Sato, Eiji Yamamoto, Kentaro K Shimizu, Atsushi J Nagano
Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory. Heredity 126 (4) (2021)
Hiromi Matsumae, Peter Ranacher, Patrick E Savage, Damián E Blasi, Thomas E Currie, Kae Koganebuchi, Nao Nishida, Takehiro Sato, Hideyuki Tanabe, Atsushi Tajima, Steven Brown, Mark Stoneking, Kentaro K Shimizu, Hiroki Oota, Balthasar Bickel
Exploring correlations in genetic and cultural variation across language families in northeast Asia. Science advances 7 (34) (2021)
Kevin Kit Siong Ng, Masaki J Kobayashi, Jeffrey A Fawcett, Masaomi Hatakeyama, Timothy Paape, Chin Hong Ng, Choon Cheng Ang, Lee Hong Tnah, Chai Ting Lee, Tomoaki Nishiyama, Jun Sese, Michael J O'Brien, Dario Copetti, Mohd Noor Mat Isa, Robert Cyril Ong, Mahardika Putra Purba, Iskandar Z Siregar, Sapto Indrioko, Yoshiko Kosugi, Ayako Izuno, Yuji Isagi, Soon Leong Lee, Kentaro K Shimizu
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests. Communications biology 4 (1) (2021)
Christian Rellstab, Stefan Zoller, Christian Sailer, Andrew Tedder, Felix Gugerli, Kentaro K Shimizu, Rolf Holderegger, Faizah Metali, Martin C Fischer
Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species. Molecular ecology 29 (22) (2020)
Reiko Akiyama, Jianqiang Sun, Masaomi Hatakeyama, Heidi E L Lischer, Roman V Briskine, Angela Hay, Xiangchao Gan, Miltos Tsiantis, Hiroshi Kudoh, Masahiro M Kanaoka, Jun Sese, Kentaro K Shimizu, Rie Shimizu-Inatsugi
Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species. The New phytologist 229 (6) (2020)
Takashi Tsuchimatsu, Hiroyuki Kakui, Misako Yamazaki, Cindy Marona, Hiroki Tsutsui, Afif Hedhly, Dazhe Meng, Yutaka Sato, Thomas Städler, Ueli Grossniklaus, Masahiro M Kanaoka, Michael Lenhard, Magnus Nordborg, Kentaro K Shimizu
Adaptive reduction of male gamete number in the selfing plant Arabidopsis thaliana. Nature communications 11 (1) (2020)
Sean Walkowiak, Liangliang Gao, Cécile Monat, Georg Haberer, Mulualem T Kassa, Jemima Brinton, Ricardo H Ramirez-Gonzalez, Markus C Kolodziej, Emily Delorean, Dinushika Thambugala, Valentina Klymiuk, Brook Byrns, Heidrun Gundlach, Venkat Bandi, Jorge Nunez Siri, Kirby T Nilsen, Catharine Aquino, Axel Himmelbach, Copetti Dario, Tomohiro Ban, Luca Venturini, Michael W Bevan, Bernardo Clavijo, Dal-Hoe Koo, Jennifer Ens, Krystalee Wiebe, Amidou N'Daiye, Allen K Fritz, Carl Gutwin, Anne Fiebig, Christine Fosker, Bin Xiao Fu, Gonzalo Garcia Accinelli, Keith A Gardner, Nick Fradgley, Juan J Gutierrez-Gonzalez, Gwyneth Halstead-Nussloch, Masaomi Hatakeyama, Chu Shin Koh, Jasline Deek, Alejandro C Costamagna, Pierre Fobert, Darren Heavens, Hiroyuki Kanamori, Kanako Kawaura, Fuminori Kobayashi, Ksenia Krasileva, Tony Kuo, Neil McKenzie, Kazuki Murata, Yusuke Nabeka, Timothy Paape, Sudharsan Padmarasu, Lawrence Percival-Alwyn, Sateesh Kagale, Uwe Scholz, Jun Sese, Philomin Juliana, Ravi Prakash Singh, Rie Shimizu-Inatsugi, David Swarbreck, James Cockram, Hikmet Budak, Toshiaki Tameshige, Tsuyoshi Tanaka, Hiroyuki Tsuji, Jonathan Wright, Jianzhong Wu, Burkhard Steuernagel, Ian D Small, Sylvie Cloutier, Gabriel Keeble-Gagnère, Gary Muehlbauer, Josquin Tibbets, Shuhei Nasuda, Joanna Melonek, Pierre J Hucl, Andrew G Sharpe, Matthew D Clark, Erik Legg, Arvind Bharti, Peter Langridge, Anthony J W Hall, Cristobal Uauy, Martin Mascher, Simon G Krattinger, Hirokazu Handa, Kentaro K Shimizu, Assaf Distelfeld, Ken Chalmers, Beat Keller, Klaus F X Mayer, Jesse A Poland, Nils Stein, Curt A McCartney, Manuel Spannagl, Thomas Wicker, Curtis J Pozniak
Multiple wheat genomes reveal global variation in modern breeding. Nature 588 (7837) (2020)
Sota Fujii, Takashi Tsuchimatsu, Yuka Kimura, Shota Ishida, Surachat Tangpranomkorn, Hiroko Shimosato-Asano, Megumi Iwano, Shoko Furukawa, Wakana Itoyama, Yuko Wada, Kentaro K Shimizu, Seiji Takayama
A stigmatic gene confers interspecies incompatibility in the Brassicaceae. Nature plants 5 (7) (2019)
Ayako Izuno, Thomas Wicker, Masaomi Hatakeyama, Copetti Dario, Kentaro K Shimizu
Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence. G3 (Bethesda, Md.) 9 (11) (2019)
Timothy Paape, Roman V Briskine, Gwyneth Halstead-Nussloch, Heidi E L Lischer, Rie Shimizu-Inatsugi, Masaomi Hatakeyama, Kenta Tanaka, Tomoaki Nishiyama, Renat Sabirov, Jun Sese, Kentaro K Shimizu
Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica. Nature communications 9 (1) (2018)
Young Hun Song, Akane Kubota, Michael S Kwon, Michael F Covington, Nayoung Lee, Ella R Taagen, Dianne Laboy Cintrón, Dae Yeon Hwang, Reiko Akiyama, Sarah K Hodge, He Huang, Nhu H Nguyen, Dmitri A Nusinow, Andrew J Millar, Kentaro K Shimizu, Takato Imaizumi
Molecular basis of flowering under natural long-day conditions in Arabidopsis. Nature plants 4 (10) (2018)