Tzong-Yi Lee

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 22

Top Topics

Extracellular Matrix

Machine Learning

Staphylococcus Aureus

Endometrial Cancer

Top Venues

International journal of molecular sciences

Briefings in bioinformatics

Nucleic acids research

Microbiology spectrum

This page only lists publications with an associated author ORCID identifier.

Publications

Renfei Ma, Shangfu Li, Luca Parisi, Wenshuo Li, Hsien-Da Huang, Tzong-Yi Lee
Holistic similarity-based prediction of phosphorylation sites for understudied kinases. Briefings in bioinformatics (2023)
Renfei Ma, Shangfu Li, Luca Parisi, Wenshuo Li, Hsien-Da Huang, Tzong-Yi Lee
Holistic similarity-based prediction of phosphorylation sites for understudied kinases. Briefings in bioinformatics 24 (2) (2023)
Chia-Ru Chung, Hsin-Yao Wang, Po-Han Chou, Li-Ching Wu, Jang-Jih Lu, Jorng-Tzong Horng, Tzong-Yi Lee
Towards Accurate Identification of Antibiotic-Resistant Pathogens through the Ensemble of Multiple Preprocessing Methods Based on MALDI-TOF Spectra. International journal of molecular sciences 24 (2) (2023)
Chia-Ru Chung, Hsin-Yao Wang, Po-Han Chou, Li-Ching Wu, Jang-Jih Lu, Jorng-Tzong Horng, Tzong-Yi Lee
Towards Accurate Identification of Antibiotic-Resistant Pathogens through the Ensemble of Multiple Preprocessing Methods Based on MALDI-TOF Spectra. International journal of molecular sciences 24 (2) (2023)
Chia-Ru Chung, Hsin-Yao Wang, Po-Han Chou, Li-Ching Wu, Jang-Jih Lu, Jorng-Tzong Horng, Tzong-Yi Lee
Towards Accurate Identification of Antibiotic-Resistant Pathogens through the Ensemble of Multiple Preprocessing Methods Based on MALDI-TOF Spectra. International journal of molecular sciences 24 (2) (2023)
Renfei Ma, Shangfu Li, Luca Parisi, Wenshuo Li, Hsien-Da Huang, Tzong-Yi Lee
Holistic similarity-based prediction of phosphorylation sites for understudied kinases. Briefings in bioinformatics 24 (2) (2023)
Chia-Ru Chung, Hsin-Yao Wang, Po-Han Chou, Li-Ching Wu, Jang-Jih Lu, Jorng-Tzong Horng, Tzong-Yi Lee
Towards Accurate Identification of Antibiotic-Resistant Pathogens through the Ensemble of Multiple Preprocessing Methods Based on MALDI-TOF Spectra. International journal of molecular sciences 24 (2) (2023)
Chi-Nga Chow, Chien-Wen Yang, Nai-Yun Wu, Hung-Teng Wang, Kuan-Chieh Tseng, Yu-Hsuan Chiu, Tzong-Yi Lee, Wen-Chi Chang
PlantPAN 4.0: updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters. Nucleic acids research (2023)
Chia-Ru Chung, Hsin-Yao Wang, Chun-Han Yao, Li-Ching Wu, Jang-Jhih Lu, Jorng-Tzong Horng, Tzong-Yi Lee
Data-Driven Two-Stage Framework for Identification and Characterization of Different Antibiotic-Resistant Escherichia coli Isolates Based on Mass Spectrometry Data. Microbiology spectrum (2023)
Hsin-Yao Wang, Chia-Ru Chung, Chao-Jung Chen, Ko-Pei Lu, Yi-Ju Tseng, Tzu-Hao Chang, Min-Hsien Wu, Wan-Ting Huang, Ting-Wei Lin, Tsui-Ping Liu, Tzong-Yi Lee, Jorng-Tzong Horng, Jang-Jih Lu
Erratum for Wang et al., "Clinically Applicable System for Rapidly Predicting Enterococcus faecium Susceptibility to Vancomycin". Microbiology spectrum 10 (1) (2022)
Mengqi Luo, Shangfu Li, Yuxuan Pang, Lantian Yao, Renfei Ma, Hsi-Yuan Huang, Hsien-Da Huang, Tzong-Yi Lee
Extraction of microRNA-target interaction sentences from biomedical literature by deep learning approach. Briefings in bioinformatics (2022)
Yuntian Zhang, Tzong-Yi Lee
Revealing the Immune Heterogeneity between Systemic Lupus Erythematosus and Rheumatoid Arthritis Based on Multi-Omics Data Analysis. International journal of molecular sciences 23 (9) (2022)
Yue Zhang, Mengqi Luo, Peng Wu, Song Wu, Tzong-Yi Lee, Chen Bai
Application of Computational Biology and Artificial Intelligence in Drug Design. International journal of molecular sciences 23 (21) (2022)
Yuxuan Pang, Lantian Yao, Jhih-Hua Jhong, Zhuo Wang, Tzong-Yi Lee
AVPIden: a new scheme for identification and functional prediction of antiviral peptides based on machine learning approaches. Briefings in bioinformatics 22 (6) (2021)
Hsin-Yao Wang, Chia-Ru Chung, Chao-Jung Chen, Ko-Pei Lu, Yi-Ju Tseng, Tzu-Hao Chang, Min-Hsien Wu, Wan-Ting Huang, Ting-Wei Lin, Tsui-Ping Liu, Tzong-Yi Lee, Jorng-Tzong Horng, Jang-Jih Lu
Clinically Applicable System for Rapidly Predicting Enterococcus faecium Susceptibility to Vancomycin. Microbiology spectrum (2021)
Hsi-Yuan Huang, Yang-Chi-Dung Lin, Shidong Cui, Yixian Huang, Yun Tang, Jiatong Xu, Jiayang Bao, Yulin Li, Jia Wen, Huali Zuo, Weijuan Wang, Jing Li, Jie Ni, Yini Ruan, Liping Li, Yidan Chen, Yueyang Xie, Zihao Zhu, Xiaoxuan Cai, Xinyi Chen, Lantian Yao, Yigang Chen, Yijun Luo, Shupeng LuXu, Mengqi Luo, Chih-Min Chiu, Kun Ma, Lizhe Zhu, Gui-Juan Cheng, Chen Bai, Ying-Chih Chiang, Liping Wang, Fengxiang Wei, Tzong-Yi Lee, Hsien-Da Huang
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. Nucleic acids research (2021)
Jhih-Hua Jhong, Lantian Yao, Yuxuan Pang, Zhongyan Li, Chia-Ru Chung, Rulan Wang, Shangfu Li, Wenshuo Li, Mengqi Luo, Renfei Ma, Yuqi Huang, Xiaoning Zhu, Jiahong Zhang, Hexiang Feng, Qifan Cheng, Chunxuan Wang, Kun Xi, Li-Ching Wu, Tzu-Hao Chang, Jorng-Tzong Horng, Lizhe Zhu, Ying-Chih Chiang, Zhuo Wang, Tzong-Yi Lee
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data. Nucleic acids research (2021)
Zhongyan Li, Shangfu Li, Mengqi Luo, Jhih-Hua Jhong, Wenshuo Li, Lantian Yao, Yuxuan Pang, Zhuo Wang, Rulan Wang, Renfei Ma, Jinhan Yu, Yuqi Huang, Xiaoning Zhu, Qifan Cheng, Hexiang Feng, Jiahong Zhang, Chunxuan Wang, Justin Bo-Kai Hsu, Wen-Chi Chang, Feng-Xiang Wei, Hsien-Da Huang, Tzong-Yi Lee
dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications. Nucleic acids research (2021)
Yigang Chen, Lantian Yao, Yun Tang, Jhih-Hua Jhong, Jingting Wan, Jingyue Chang, Shidong Cui, Yijun Luo, Xiaoxuan Cai, Wenshuo Li, Qi Chen, Hsi-Yuan Huang, Zhuo Wang, Weiming Chen, Tzu-Hao Chang, Fengxiang Wei, Tzong-Yi Lee, Hsien-Da Huang
CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers. Nucleic acids research (2021)
Vijesh Kumar Yadav, Tzong-Yi Lee, Justin Bo-Kai Hsu, Hsien-Da Huang, Wei-Chung Vivian Yang, Tzu-Hao Chang
Computational analysis for identification of the extracellular matrix molecules involved in endometrial cancer progression. PloS one 15 (4) (2020)
Hsin-Yao Wang, Wen-Chi Li, Kai-Yao Huang, Chia-Ru Chung, Jorng-Tzong Horng, Jen-Fu Hsu, Jang-Jih Lu, Tzong-Yi Lee
Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques. BMC bioinformatics 20 (Suppl 19) (2019)
Hsin-Yao Wang, Tzong-Yi Lee, Yi-Ju Tseng, Tsui-Ping Liu, Kai-Yao Huang, Yung-Ta Chang, Chun-Hsien Chen, Jang-Jih Lu
A new scheme for strain typing of methicillin-resistant Staphylococcus aureus on the basis of matrix-assisted laser desorption ionization time-of-flight mass spectrometry by using machine learning approach. PloS one 13 (3) (2018)