Vinayak Agarwal

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 36

Top Topics

Mass Spectrometry

Top Venues

ACS chemical biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Weimao Zhong, Vinayak Agarwal
Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty. Beilstein journal of organic chemistry 20 (2024)
Nguyet A Nguyen, F N U Vidya, Neela H Yennawar, Hongwei Wu, Andrew C McShan, Vinayak Agarwal
Disordered regions in proteusin peptides guide post-translational modification by a flavin-dependent RiPP brominase. Nature communications 15 (1) (2024)
Weimao Zhong, Vinayak Agarwal
Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty. Beilstein journal of organic chemistry 20 (2024)
Vinayak Agarwal, Andrew C McShan
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins. Nature chemical biology (2024)
Zhenjian Lin, Vinayak Agarwal, Ying Cong, Shirley A Pomponi, Eric W Schmidt
Short macrocyclic peptides in sponge genomes. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Zhenjian Lin, Vinayak Agarwal, Ying Cong, Shirley A Pomponi, Eric W Schmidt
Short macrocyclic peptides in sponge genomes. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Nguyet A Nguyen, F N U Vidya, Neela H Yennawar, Hongwei Wu, Andrew C McShan, Vinayak Agarwal
Disordered regions in proteusin peptides guide post-translational modification by a flavin-dependent RiPP brominase. Nature communications 15 (1) (2024)
Vinayak Agarwal, Andrew C McShan
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins. Nature chemical biology 20 (8) (2024)
Vinayak Agarwal, Andrew C McShan
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins. Nature chemical biology (2024)
Nguyet A Nguyen, F N U Vidya, Neela H Yennawar, Hongwei Wu, Andrew C McShan, Vinayak Agarwal
Disordered regions in proteusin peptides guide post-translational modification by a flavin-dependent RiPP brominase. Nature communications 15 (1) (2024)
Weimao Zhong, Jeremiah O Olugbami, Prashanth Rathakrishnan, Ipsita Mohanty, Samuel G Moore, Neha Garg, Adegboyega K Oyelere, Thomas L Turner, Andrew C McShan, Vinayak Agarwal
Discovery and Folding Dynamics of a Fused Bicyclic Cysteine Knot Undecapeptide from the Marine Sponge Halichondria bowerbanki . The Journal of organic chemistry (2024)
Zhenjian Lin, Vinayak Agarwal, Ying Cong, Shirley A Pomponi, Eric W Schmidt
Short macrocyclic peptides in sponge genomes. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Zhenjian Lin, Vinayak Agarwal, Ying Cong, Shirley A Pomponi, Eric W Schmidt
Short macrocyclic peptides in sponge genomes. Proceedings of the National Academy of Sciences of the United States of America 121 (11) (2024)
Dongqi Yi, Mujeeb A Wakeel, Vinayak Agarwal
Gatekeeping Activity of Collinear Ketosynthase Domains Limits Product Diversity for Engineered Type I Polyketide Synthases. Biochemistry (2024)
Nguyet A Nguyen, F N U Vidya, Neela H Yennawar, Hongwei Wu, Andrew C McShan, Vinayak Agarwal
Disordered regions in proteusin peptides guide post-translational modification by a flavin-dependent RiPP brominase. Nature communications 15 (1) (2024)
Nguyet A Nguyen, Vinayak Agarwal
A Leader-Guided Substrate Tolerant RiPP Brominase Allows Suzuki-Miyaura Cross-Coupling Reactions for Peptides and Proteins. Biochemistry (2023)
Jessica M Deutsch, Madison O Green, Priyanka Akavaram, Ashleigh C Davis, Sarth S Diskalkar, Isabelle A Du Plessis, Hannah A Fallon, Emma M Grason, Emma G Kauf, Zoe M Kim, Jeffrey R Miller, Abby L Neal, Tatiana Riera, Sofie-Ellen Stroeva, Jollin Tran, Vivi Tran, Azucena Velgara Coronado, Vanessa Velgara Coronado, Benjamin T Wall, Chung Mo Yang, Ipsita Mohanty, Nadine H Abrahamse, Christopher J Freeman, Cole G Easson, Cara L Fiore, Alison E Onstine, Naima Djeddar, Shweta Biliya, Anton V Bryksin, Neha Garg, Vinayak Agarwal
Limited Metabolomic Overlap between Commensal Bacteria and Marine Sponge Holobionts Revealed by Large Scale Culturing and Mass Spectrometry-Based Metabolomics: An Undergraduate Laboratory Pedagogical Effort at Georgia Tech. Marine drugs 21 (1) (2023)
Weimao Zhong, Jessica M Deutsch, Dongqi Yi, Nadine H Abrahamse, Ipsita Mohanty, Samuel G Moore, Andrew C McShan, Neha Garg, Vinayak Agarwal
Discovery and Biosynthesis of Ureidopeptide Natural Products Macrocyclized via Indole N-acylation in Marine Microbulbifer spp. Bacteria. Chembiochem : a European journal of chemical biology (2023)
Weimao Zhong, Nicole Aiosa, Jessica M Deutsch, Neha Garg, Vinayak Agarwal
Pseudobulbiferamides: Plasmid-Encoded Ureidopeptide Natural Products with Biosynthetic Gene Clusters Shared Among Marine Bacteria of Different Genera. Journal of natural products (2023)
Jessica M Deutsch, Madison O Green, Priyanka Akavaram, Ashleigh C Davis, Sarth S Diskalkar, Isabelle A Du Plessis, Hannah A Fallon, Emma M Grason, Emma G Kauf, Zoe M Kim, Jeffrey R Miller, Abby L Neal, Tatiana Riera, Sofie-Ellen Stroeva, Jollin Tran, Vivi Tran, Azucena Velgara Coronado, Vanessa Velgara Coronado, Benjamin T Wall, Chung Mo Yang, Ipsita Mohanty, Nadine H Abrahamse, Christopher J Freeman, Cole G Easson, Cara L Fiore, Alison E Onstine, Naima Djeddar, Shweta Biliya, Anton V Bryksin, Neha Garg, Vinayak Agarwal
Limited Metabolomic Overlap between Commensal Bacteria and Marine Sponge Holobionts Revealed by Large Scale Culturing and Mass Spectrometry-Based Metabolomics: An Undergraduate Laboratory Pedagogical Effort at Georgia Tech. Marine drugs 21 (1) (2023)
Dongqi Yi, Vinayak Agarwal
Biosynthesis-Guided Discovery and Engineering of α-Pyrone Natural Products from Type I Polyketide Synthases. ACS chemical biology (2023)
Jessica M Deutsch, Madison O Green, Priyanka Akavaram, Ashleigh C Davis, Sarth S Diskalkar, Isabelle A Du Plessis, Hannah A Fallon, Emma M Grason, Emma G Kauf, Zoe M Kim, Jeffrey R Miller, Abby L Neal, Tatiana Riera, Sofie-Ellen Stroeva, Jollin Tran, Vivi Tran, Azucena Velgara Coronado, Vanessa Velgara Coronado, Benjamin T Wall, Chung Mo Yang, Ipsita Mohanty, Nadine H Abrahamse, Christopher J Freeman, Cole G Easson, Cara L Fiore, Alison E Onstine, Naima Djeddar, Shweta Biliya, Anton V Bryksin, Neha Garg, Vinayak Agarwal
Limited Metabolomic Overlap between Commensal Bacteria and Marine Sponge Holobionts Revealed by Large Scale Culturing and Mass Spectrometry-Based Metabolomics: An Undergraduate Laboratory Pedagogical Effort at Georgia Tech. Marine drugs 21 (1) (2023)
Jessica M Deutsch, Madison O Green, Priyanka Akavaram, Ashleigh C Davis, Sarth S Diskalkar, Isabelle A Du Plessis, Hannah A Fallon, Emma M Grason, Emma G Kauf, Zoe M Kim, Jeffrey R Miller, Abby L Neal, Tatiana Riera, Sofie-Ellen Stroeva, Jollin Tran, Vivi Tran, Azucena Velgara Coronado, Vanessa Velgara Coronado, Benjamin T Wall, Chung Mo Yang, Ipsita Mohanty, Nadine H Abrahamse, Christopher J Freeman, Cole G Easson, Cara L Fiore, Alison E Onstine, Naima Djeddar, Shweta Biliya, Anton V Bryksin, Neha Garg, Vinayak Agarwal
Limited Metabolomic Overlap between Commensal Bacteria and Marine Sponge Holobionts Revealed by Large Scale Culturing and Mass Spectrometry-Based Metabolomics: An Undergraduate Laboratory Pedagogical Effort at Georgia Tech. Marine drugs 21 (1) (2023)
Nguyet A Nguyen, Ying Cong, Rachel C Hurrell, Natalie Arias, Neha Garg, Aaron W Puri, Eric W Schmidt, Vinayak Agarwal
A Silent Biosynthetic Gene Cluster from a Methanotrophic Bacterium Potentiates Discovery of a Substrate Promiscuous Proteusin Cyclodehydratase. ACS chemical biology 17 (6) (2022)
Dongqi Yi, Dhirendra Niroula, Will R Gutekunst, Joyce E Loper, Qing Yan, Vinayak Agarwal
A Nonfunctional Halogenase Masquerades as an Aromatizing Dehydratase in Biosynthesis of Pyrrolic Polyketides by Type I Polyketide Synthases. ACS chemical biology 17 (6) (2022)
Atanu Acharya, Dongqi Yi, Anna Pavlova, Vinayak Agarwal, James C Gumbart
Resolving the Hydride Transfer Pathway in Oxidative Conversion of Proline to Pyrrole. Biochemistry 61 (3) (2022)
Hem R Thapa, Vinayak Agarwal
Obligate Brominating Enzymes Underlie Bromoform Production by Marine Cyanobacteria. Journal of phycology 57 (4) (2021)
Ipsita Mohanty, Subhasish Tapadar, Samuel G Moore, Jason S Biggs, Christopher J Freeman, David A Gaul, Neha Garg, Vinayak Agarwal
Presence of Bromotyrosine Alkaloids in Marine Sponges Is Independent of Metabolomic and Microbiome Architectures. mSystems 6 (2) (2021)
Nguyet A Nguyen, Zhenjian Lin, Ipsita Mohanty, Neha Garg, Eric W Schmidt, Vinayak Agarwal
An Obligate Peptidyl Brominase Underlies the Discovery of Highly Distributed Biosynthetic Gene Clusters in Marine Sponge Microbiomes. Journal of the American Chemical Society 143 (27) (2021)
Ipsita Mohanty, Samuel G Moore, Jason S Biggs, Christopher J Freeman, David A Gaul, Neha Garg, Vinayak Agarwal
Stereochemical Assignment and Absolute Abundance of Nonproteinogenic Amino Acid Homoarginine in Marine Sponges. ACS omega 6 (48) (2021)
Ipsita Mohanty, Nguyet A Nguyen, Samuel G Moore, Jason S Biggs, David A Gaul, Neha Garg, Vinayak Agarwal
Enzymatic Synthesis Assisted Discovery of Proline-Rich Macrocyclic Peptides in Marine Sponges. Chembiochem : a European journal of chemical biology 22 (16) (2021)
Dongqi Yi, Atanu Acharya, James C Gumbart, Will R Gutekunst, Vinayak Agarwal
Gatekeeping Ketosynthases Dictate Initiation of Assembly Line Biosynthesis of Pyrrolic Polyketides. Journal of the American Chemical Society 143 (20) (2021)
Hem R Thapa, Zhenjian Lin, Dongqi Yi, Jennifer E Smith, Eric W Schmidt, Vinayak Agarwal
Genetic and Biochemical Reconstitution of Bromoform Biosynthesis in Asparagopsis Lends Insights into Seaweed Reactive Oxygen Species Enzymology. ACS chemical biology 15 (6) (2020)
Ipsita Mohanty, Samuel G Moore, Dongqi Yi, Jason S Biggs, David A Gaul, Neha Garg, Vinayak Agarwal
Precursor-Guided Mining of Marine Sponge Metabolomes Lends Insight into Biosynthesis of Pyrrole-Imidazole Alkaloids. ACS chemical biology 15 (8) (2020)
Ipsita Mohanty, Sheila Podell, Jason S Biggs, Neha Garg, Eric E Allen, Vinayak Agarwal
Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. Marine drugs 18 (2) (2020)
Hem R Thapa, John M Robbins, Bradley S Moore, Vinayak Agarwal
Insights into Thiotemplated Pyrrole Biosynthesis Gained from the Crystal Structure of Flavin-Dependent Oxidase in Complex with Carrier Protein. Biochemistry 58 (7) (2019)