William E Fondrie

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 18

Top Venues

Journal of proteome research

Analytical chemistry

Scientific reports

University of Washington

University of Maryland Baltimore (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Washington Jul 16 2018

United States

Senior Fellow :: Department of Genome Sciences

Education History

University of Maryland Baltimore - Jun 28 2018

United States

PHD :: Molecular Medicine

University of North Carolina at Chapel Hill

United States

BSC :: Chemistry

Publications

Carlo Melendez, Justin Sanders, Melih Yilmaz, Wout Bittremieux, William E Fondrie, Sewoong Oh, William Stafford Noble
Accounting for Digestion Enzyme Bias in Casanovo. Journal of proteome research (2024)
Lincoln Harris, William E Fondrie, Sewoong Oh, William Stafford Noble
Evaluating Proteomics Imputation Methods with Improved Criteria. Journal of proteome research (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research (2023)
Issar Arab, William E Fondrie, Kris Laukens, Wout Bittremieux
Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching. Journal of proteome research 22 (2) (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Issar Arab, William E Fondrie, Kris Laukens, Wout Bittremieux
Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching. Journal of proteome research 22 (2) (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Carolyn Allen, Rico Meinl, J Sebastian Paez, Brian C Searle, Seth Just, Lindsay K Pino, William E Fondrie
nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics Workflows. Journal of proteome research (2023)
Issar Arab, William E Fondrie, Kris Laukens, Wout Bittremieux
Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching. Journal of proteome research (2023)
Issar Arab, William E Fondrie, Kris Laukens, Wout Bittremieux
Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching. Journal of proteome research 22 (2) (2023)
Lilian R Heil, William E Fondrie, Christopher D McGann, Alexander J Federation, William S Noble, Michael J MacCoss, Uri Keich
Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data. Journal of proteome research 21 (6) (2022)
William E Fondrie, Wout Bittremieux, William Stafford Noble
ppx: Programmatic Access to Proteomics Data Repositories. Journal of proteome research 20 (9) (2021)
William E Fondrie, William Stafford Noble
mokapot: Fast and Flexible Semisupervised Learning for Peptide Detection. Journal of proteome research 20 (4) (2021)
William E Fondrie, William Stafford Noble
Machine Learning Strategy That Leverages Large Data sets to Boost Statistical Power in Small-Scale Experiments. Journal of proteome research 19 (3) (2020)
Tao Liang, Lisa M Leung, Belita Opene, William E Fondrie, Young In Lee, Courtney E Chandler, Sung Hwan Yoon, Yohei Doi, Robert K Ernst, David R Goodlett
Rapid Microbial Identification and Antibiotic Resistance Detection by Mass Spectrometric Analysis of Membrane Lipids. Analytical chemistry 91 (2) (2019)
William E Fondrie, Tao Liang, Benjamin L Oyler, Lisa M Leung, Robert K Ernst, Dudley K Strickland, David R Goodlett
Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids. Scientific reports 8 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

William E Fondrie