Michael J MacCoss (Michael MacCoss)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 106

Top Venues

bioRxiv : the preprint server for biology

Journal of proteome research

Nature methods

Nature

University of Washington

University of Vermont (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Washington Jan 01 2004

United States

Professor :: Genome Sciences

Education History

University of Vermont

United States

PHD :: Chemistry

Publications

Bo Wen, Jack Freestone, Michael Riffle, Michael J MacCoss, William Stafford Noble, Uri Keich
Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment. bioRxiv : the preprint server for biology (2024)
Rachel L Lombardi, John S Ramsey, Jaclyn E Mahoney, Michael J MacCoss, Michelle L Heck, Carolyn M Slupsky
Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus. Journal of proteome research 23 (8) (2024)
Christine C Wu, Kristine A Tsantilas, Jea Park, Deanna Plubell, Justin A Sanders, Previn Naicker, Ireshyn Govender, Sindisiwe Buthelezi, Stoyan Stoychev, Justin Jordaan, Gennifer E Merrihew, Eric Huang, Edward D Parker, Michael Riffle, Andrew N Hoofnagle, William Stafford Noble, Kathleen L Poston, Thomas J Montine, Michael J MacCoss
Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome. bioRxiv : the preprint server for biology (2024)
Francesca Marino, Dan Wang, Gennifer E Merrihew, Michael J MacCoss, Dena B Dubal
A second X chromosome improves cognition in aging male and female mice. bioRxiv : the preprint server for biology (2024)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje, Amy Martinson, Richard S Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States. Circulation 149 (23) (2024)
Christine C Wu, Kristine A Tsantilas, Jea Park, Deanna Plubell, Justin A Sanders, Previn Naicker, Ireshyn Govender, Sindisiwe Buthelezi, Stoyan Stoychev, Justin Jordaan, Gennifer E Merrihew, Eric Huang, Edward D Parker, Michael Riffle, Andrew N Hoofnagle, William Stafford Noble, Kathleen L Poston, Thomas J Montine, Michael J MacCoss
Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome. bioRxiv : the preprint server for biology (2024)
Philip M Remes, Cristina C Jacob, Lilian R Heil, Nicholas Shulman, Brendan X MacLean, Michael J MacCoss
Hybrid Quadrupole Mass Filter - Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics. bioRxiv : the preprint server for biology (2024)
Rachel L Lombardi, John S Ramsey, Jaclyn E Mahoney, Michael J MacCoss, Michelle L Heck, Carolyn M Slupsky
Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus. Journal of proteome research (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Christine C Wu, Kristine A Tsantilas, Jea Park, Deanna Plubell, Justin A Sanders, Previn Naicker, Ireshyn Govender, Sindisiwe Buthelezi, Stoyan Stoychev, Justin Jordaan, Gennifer E Merrihew, Eric Huang, Edward D Parker, Michael Riffle, Andrew N Hoofnagle, William Stafford Noble, Kathleen L Poston, Thomas J Montine, Michael J MacCoss
Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome. bioRxiv : the preprint server for biology (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Jesse D Canterbury, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A Framework for Quality Control in Quantitative Proteomics. Journal of proteome research (2024)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje, Amy Martinson, Richard S Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States. Circulation 149 (23) (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Michael C Saul, Elizabeth M Litkowski, Niran Hadad, Amy R Dunn, Stephanie M Boas, Jon A L Willcox, Julia E Robbins, Yiyang Wu, Philipp P Henrich, Gennifer E Merrihew, Jea Park, Philip Lawrence De Jager, Dave E Bridges, Vilas Menon, David A Bennett, Timothy J Hohman, Michael J MacCoss, Catherine C Kaczorowski
Hippocampus Glutathione S Reductase Potentially Confers Genetic Resilience to Cognitive Decline in the AD-BXD Mouse Population. bioRxiv : the preprint server for biology (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje, Amy Martinson, Richard S Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States. Circulation 149 (23) (2024)
Rachel L Lombardi, John S Ramsey, Jaclyn E Mahoney, Michael J MacCoss, Michelle L Heck, Carolyn M Slupsky
Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus. Journal of proteome research 23 (8) (2024)
Christine C Wu, Kristine A Tsantilas, Jea Park, Deanna Plubell, Justin A Sanders, Previn Naicker, Ireshyn Govender, Sindisiwe Buthelezi, Stoyan Stoychev, Justin Jordaan, Gennifer E Merrihew, Eric Huang, Edward D Parker, Michael Riffle, Andrew N Hoofnagle, William Stafford Noble, Kathleen L Poston, Thomas J Montine, Michael J MacCoss
Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome. bioRxiv : the preprint server for biology (2024)
Bo Wen, Jack Freestone, Michael Riffle, Michael J MacCoss, William Stafford Noble, Uri Keich
Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment. bioRxiv : the preprint server for biology (2024)
Christine C Wu, Kristine A Tsantilas, Jea Park, Deanna Plubell, Justin A Sanders, Previn Naicker, Ireshyn Govender, Sindisiwe Buthelezi, Stoyan Stoychev, Justin Jordaan, Gennifer E Merrihew, Eric Huang, Edward D Parker, Michael Riffle, Andrew N Hoofnagle, William Stafford Noble, Kathleen L Poston, Thomas J Montine, Michael J MacCoss
Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome. bioRxiv : the preprint server for biology (2024)
Rachel L Lombardi, John S Ramsey, Jaclyn E Mahoney, Michael J MacCoss, Michelle L Heck, Carolyn M Slupsky
Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus. Journal of proteome research 23 (8) (2024)
Francesca Marino, Dan Wang, Gennifer E Merrihew, Michael J MacCoss, Dena B Dubal
A second X chromosome improves cognition in aging male and female mice. bioRxiv : the preprint server for biology (2024)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje, Amy Martinson, Richard S Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States. Circulation (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje, Amy Martinson, Richard S Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States. Circulation 149 (23) (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Ratna R Thangudu, Michael Holck, Deepak Singhal, Alexander Pilozzi, Nathan J Edwards, Paul A Rudnick, Marcin J Domagalski, Padmini Chilappagari, Lei Ma, Yi Xin, Toan Le, Kristen Nyce, Rekha Chaudhary, Karen A Ketchum, Aaron Maurais, Brian Connolly, Michael Riffle, Matthew C Chambers, Brendan X MacLean, Michael J MacCoss, Peter B McGarvey, Anand Basu, John Otridge, Esmeralda Casas-Silva, Sudha Venkatachari, Henry Rodriguez, Xu Zhang
NCI's Proteomic Data Commons: A Cloud-Based Proteomics Repository Empowering Comprehensive Cancer Analysis Through Cross-Referencing with Genomic and Imaging Data. Cancer research communications (2024)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje, Amy Martinson, Richard S Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States. Circulation (2024)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje, Amy Martinson, Richard S Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States. Circulation 149 (23) (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Juan Jesus Vicente, Michael Wagenbach, Justin Decarreau, Alex Zelter, Michael J MacCoss, Trisha N Davis, Linda Wordeman
The kinesin motor Kif9 regulates centriolar satellite positioning and mitotic progression. bioRxiv : the preprint server for biology (2024)
Deanna L Plubell, Eric Huang, Sandra E Spencer, Kathleen L Poston, Thomas J Montine, Michael J MacCoss
Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass Spectrometer. bioRxiv : the preprint server for biology (2024)
Rachel L Lombardi, John S Ramsey, Jaclyn E Mahoney, Michael J MacCoss, Michelle L Heck, Carolyn M Slupsky
Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus. Journal of proteome research 23 (8) (2024)
Michael C Saul, Elizabeth M Litkowski, Niran Hadad, Amy R Dunn, Stephanie M Boas, Jon A L Willcox, Julia E Robbins, Yiyang Wu, Philipp P Henrich, Gennifer E Merrihew, Jea Park, Philip Lawrence De Jager, Dave E Bridges, Vilas Menon, David A Bennett, Timothy J Hohman, Michael J MacCoss, Catherine C Kaczorowski
Hippocampus Glutathione S Reductase Potentially Confers Genetic Resilience to Cognitive Decline in the AD-BXD Mouse Population. bioRxiv : the preprint server for biology (2024)
Bo Wen, Jack Freestone, Michael Riffle, Michael J MacCoss, William Stafford Noble, Uri Keich
Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment. bioRxiv : the preprint server for biology (2024)
Philip M Remes, Cristina C Jacob, Lilian R Heil, Nicholas Shulman, Brendan X MacLean, Michael J MacCoss
Hybrid Quadrupole Mass Filter - Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics. bioRxiv : the preprint server for biology (2024)
Deanna L Plubell, Philip M Remes, Christine C Wu, Cristina C Jacob, Gennifer E Merrihew, Chris Hsu, Nick Shulman, Brendan X MacLean, Lilian R Heil, Kathleen L Poston, Tom Montine, Michael J MacCoss
Development of highly multiplex targeted proteomics assays in biofluids using the Stellar mass spectrometer. bioRxiv : the preprint server for biology (2024)
Deanna L Plubell, Philip M Remes, Christine C Wu, Cristina C Jacob, Gennifer E Merrihew, Chris Hsu, Nick Shulman, Brendan X MacLean, Lilian R Heil, Kathleen L Poston, Tom Montine, Michael J MacCoss
Development of highly multiplex targeted proteomics assays in biofluids using the Stellar mass spectrometer. bioRxiv : the preprint server for biology (2024)
Deanna L Plubell, Eric Huang, Sandra E Spencer, Kathleen L Poston, Thomas J Montine, Michael J MacCoss
Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass Spectrometer. bioRxiv : the preprint server for biology (2024)
Philip M Remes, Cristina C Jacob, Lilian R Heil, Nicholas Shulman, Brendan X MacLean, Michael J MacCoss
Hybrid Quadrupole Mass Filter - Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics. bioRxiv : the preprint server for biology (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Michael C Saul, Elizabeth M Litkowski, Niran Hadad, Amy R Dunn, Stephanie M Boas, Jon A L Willcox, Julia E Robbins, Yiyang Wu, Philipp P Henrich, Gennifer E Merrihew, Jea Park, Philip Lawrence De Jager, Dave E Bridges, Vilas Menon, David A Bennett, Timothy J Hohman, Michael J MacCoss, Catherine C Kaczorowski
Hippocampus Glutathione S Reductase Potentially Confers Genetic Resilience to Cognitive Decline in the AD-BXD Mouse Population. bioRxiv : the preprint server for biology (2024)
Deanna L Plubell, Philip M Remes, Christine C Wu, Cristina C Jacob, Gennifer E Merrihew, Chris Hsu, Nick Shulman, Brendan X MacLean, Lilian R Heil, Kathleen L Poston, Tom Montine, Michael J MacCoss
Development of highly multiplex targeted proteomics assays in biofluids using the Stellar mass spectrometer. bioRxiv : the preprint server for biology (2024)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Koya Yakabi, Eloise Berson, Kathleen S Montine, Sean C Bendall, Michael J MacCoss, Kathleen L Poston, Thomas J Montine
Human cerebrospinal fluid single exosomes in Parkinson's and Alzheimer's diseases. bioRxiv : the preprint server for biology (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Lilian R Heil, Eugen Damoc, Tabiwang N Arrey, Anna Pashkova, Eduard Denisov, Johannes Petzoldt, Amelia Peterson, Chris Hsu, Brian C Searle, Nicholas Shulman, Michael Riffle, Brian Connolly, Brendan X MacLean, Philip M Remes, Michael Senko, Hamish Stewart, Christian Hock, Alexander Makarov, Daniel Hermanson, Vlad Zabrouskov, Christine C Wu, Michael J MacCoss
Evaluating the performance of the Astral mass analyzer for quantitative proteomics using data independent acquisition. bioRxiv : the preprint server for biology (2023)
Logan R J Bailey, Darrian Bugg, Isabella M Reichardt, C Dessirée Ortaç, Jagadambika Gunaje, Richard Johnson, Michael J MacCoss, Tomoya Sakamoto, Daniel P Kelly, Michael Regnier, Jennifer M Davis
MBNL1 regulates programmed postnatal switching between regenerative and differentiated cardiac states. bioRxiv : the preprint server for biology (2023)
Michael J MacCoss, Javier Antonio Alfaro, Danielle A Faivre, Christine C Wu, Meni Wanunu, Nikolai Slavov
Sampling the proteome by emerging single-molecule and mass spectrometry methods. Nature methods 20 (3) (2023)
Gennifer E Merrihew, Jea Park, Deanna Plubell, Brian C Searle, C Dirk Keene, Eric B Larson, Randell J Bateman, Richard J Perrin, Jasmeer P Chhatwal, Martin R Farlow, Catriona A McLean, Bernardino Ghetti, Kathy L Newell, Matthew P Frosch, Thomas J Montine, Michael J MacCoss
A peptide-centric quantitative proteomics dataset for the phenotypic assessment of Alzheimer's disease. Scientific data 10 (1) (2023)
Zhi Huang, Gennifer E Merrihew, Eric B Larson, Jea Park, Deanna L Plubell, Edward J Fox, Kathleen S Montine, Caitlin S Latimer, C Dirk Keene, James Y Zou, Michael J MacCoss, Thomas J Montine
Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer's disease. Nature communications 14 (1) (2023)
Michael J MacCoss, Javier Antonio Alfaro, Danielle A Faivre, Christine C Wu, Meni Wanunu, Nikolai Slavov
Sampling the proteome by emerging single-molecule and mass spectrometry methods. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Zhi Huang, Gennifer E Merrihew, Eric B Larson, Jea Park, Deanna L Plubell, Edward J Fox, Kathleen S Montine, Caitlin S Latimer, C Dirk Keene, James Y Zou, Michael J MacCoss, Thomas J Montine
Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer's disease. Nature communications 14 (1) (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research (2023)
Michael J MacCoss, Javier Antonio Alfaro, Danielle A Faivre, Christine C Wu, Meni Wanunu, Nikolai Slavov
Sampling the proteome by emerging single-molecule and mass spectrometry methods. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research (2023)
Koya Yakabi, Eloise Berson, Kathleen S Montine, Sean C Bendall, Michael J MacCoss, Kathleen L Poston, Thomas J Montine
Human cerebrospinal fluid single exosomes in Parkinson's and Alzheimer's diseases. bioRxiv : the preprint server for biology (2023)
Lilian R Heil, Philip M Remes, Jesse D Canterbury, Ping Yip, William D Barshop, Christine C Wu, Michael J MacCoss
Dynamic Data-Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment. Analytical chemistry (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods (2023)
Attila Kertesz-Farkas, Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K Eng, William E Fondrie, Charles Grant, Michael R Hoopmann, Andy Lin, Yang Y Lu, Robert L Moritz, Michael J MacCoss, William Stafford Noble
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of proteome research 22 (2) (2023)
Erin S Baker, Corey Hoang, Winnie Uritboonthai, Heino M Heyman, Brian S Pratt, Michael J MacCoss, Brendan MacLean, Robert Plumb, Aries Aisporna, Gary E Siuzdak
METLIN-CCS: an ion mobility spectrometry collision cross section database. Nature methods (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Susana Vázquez Torres, Philip J Y Leung, Preetham Venkatesh, Isaac D Lutz, Fabian Hink, Huu-Hien Huynh, Jessica Becker, Andy Hsien-Wei Yeh, David C Juergens, Nathaniel R Bennett, Andrew N Hoofnagle, Eric Huang, Michael J MacCoss, Marc Expòsit, Gyu Rie Lee, Asim K Bera, Alex Kang, Joshmyn De La Cruz, Paul M Levine, Xinting Li, Mila Lamb, Stacey R Gerben, Analisa Murray, Piper Heine, Elif Nihal Korkmaz, Jeff Nivala, Lance Stewart, Joseph L Watson, Joseph M Rogers, Julien S Baker
De novo design of high-affinity binders of bioactive helical peptides. Nature 626 (7998) (2023)
Lilian R Heil, Eugen Damoc, Tabiwang N Arrey, Anna Pashkova, Eduard Denisov, Johannes Petzoldt, Amelia C Peterson, Chris Hsu, Brian C Searle, Nicholas Shulman, Michael Riffle, Brian Connolly, Brendan X MacLean, Philip M Remes, Michael W Senko, Hamish I Stewart, Christian Hock, Alexander A Makarov, Daniel Hermanson, Vlad Zabrouskov, Christine C Wu, Michael J MacCoss
Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition. Journal of proteome research (2023)
Deanna L Plubell, Lukas Käll, Bobbie-Jo Webb-Robertson, Lisa M Bramer, Ashley N Ives, Michael P Snyder, Lloyd M Smith, Thomas J Montine, Christine C Wu, Michael J MacCoss
Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? Journal of proteome research 21 (4) (2022)
Nathan Basisty, Nicholas Shulman, Cameron Wehrfritz, Alexandra N Marsh, Samah Shah, Jacob Rose, Scott Ebert, Matthew Miller, Dao-Fu Dai, Peter S Rabinovitch, Christopher M Adams, Michael J MacCoss, Brendan MacLean, Birgit Schilling
TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies. Journal of proteome research (2022)
Kaylie I Kirkwood, Brian S Pratt, Nicholas Shulman, Kaipo Tamura, Michael J MacCoss, Brendan X MacLean, Erin S Baker
Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions. Nature protocols 17 (11) (2022)
Lilian R Heil, William E Fondrie, Christopher D McGann, Alexander J Federation, William S Noble, Michael J MacCoss, Uri Keich
Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data. Journal of proteome research 21 (6) (2022)
Michael Riffle, Michael R Hoopmann, Daniel Jaschob, Guo Zhong, Robert L Moritz, Michael J MacCoss, Trisha N Davis, Nina Isoherranen, Alex Zelter
Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry. Analytical chemistry 94 (8) (2022)
Duo Peng, Evdoxia G Kakani, Enzo Mameli, Charles Vidoudez, Sara N Mitchell, Gennifer E Merrihew, Michael J MacCoss, Kelsey L Adams, Tasneem A Rinvee, W Robert Shaw, Flaminia Catteruccia
A male steroid controls female sexual behaviour in the malaria mosquito. Nature 608 (7921) (2022)
Axel F Brilot, Andrew S Lyon, Alex Zelter, Shruthi Viswanath, Alison Maxwell, Michael J MacCoss, Eric G Muller, Andrej Sali, Trisha N Davis, David A Agard
CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation. eLife 10 (2021)
Lilian R Heil, Philip M Remes, Michael J MacCoss
Comparison of Unit Resolution Versus High-Resolution Accurate Mass for Parallel Reaction Monitoring. Journal of proteome research 20 (9) (2021)
Alexandra N Marsh, Vagisha Sharma, Surya K Mani, Olga Vitek, Michael J MacCoss, Brendan X MacLean
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline. Journal of proteome research 21 (1) (2021)
Deborah O Dele-Oni, Karen E Christianson, Shawn B Egri, Alvaro Sebastian Vaca Jacome, Katherine C DeRuff, James Mullahoo, Vagisha Sharma, Desiree Davison, Tak Ko, Michael Bula, Joel Blanchard, Jennie Z Young, Lev Litichevskiy, Xiaodong Lu, Daniel Lam, Jacob K Asiedu, Caidin Toder, Adam Officer, Ryan Peckner, Michael J MacCoss, Li-Huei Tsai, Steven A Carr, Malvina Papanastasiou, Jacob D Jaffe
Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds. Scientific data 8 (1) (2021)
Stacy L DeBlasio, Jennifer R Wilson, Cecilia Tamborindeguy, Richard S Johnson, Patricia V Pinheiro, Michael J MacCoss, Stewart M Gray, Michelle L Heck
Affinity Purification-Mass Spectrometry Identifies a Novel Interaction between a Polerovirus and a Conserved Innate Immunity Aphid Protein that Regulates Transmission Efficiency. Journal of proteome research 20 (6) (2021)
Evan E Hubbard, Lilian R Heil, Gennifer E Merrihew, Jasmeer P Chhatwal, Martin R Farlow, Catriona A McLean, Bernardino Ghetti, Kathy L Newell, Matthew P Frosch, Randall J Bateman, Eric B Larson, C Dirk Keene, Richard J Perrin, Thomas J Montine, Michael J MacCoss, Ryan R Julian
Does Data-Independent Acquisition Data Contain Hidden Gems? A Case Study Related to Alzheimer's Disease. Journal of proteome research (2021)
Nicholas B Woodall, Zara Y Weinberg, Jesslyn Park, Florian Busch, Richard S Johnson, Mikayla J Feldbauer, Michael Murphy, Margaret Ahlrichs, Issa Yousif, Michael J MacCoss, Vicki H Wysocki, Hana El-Samad, Julien S Baker
De novo design of tyrosine and serine kinase-driven protein switches. Nature structural & molecular biology 28 (9) (2021)
Ke Pan, Yulun Chiu, Eric Huang, Michelle Chen, Junmei Wang, Ivy Lai, Shailbala Singh, Rebecca Shaw, Michael J MacCoss, Cassian Yee
Immunogenic SARS-CoV2 Epitopes Defined by Mass Spectrometry. bioRxiv : the preprint server for biology (2021)
Kaylie I Kirkwood, Michael W Christopher, Jefferey L Burgess, Sally R Littau, Kevin Foster, Karen Richey, Brian S Pratt, Nicholas Shulman, Kaipo Tamura, Michael J MacCoss, Brendan X MacLean, Erin S Baker
Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity. Journal of proteome research (2021)
Philip M Remes, Ping Yip, Michael J MacCoss
Highly Multiplex Targeted Proteomics Enabled by Real-Time Chromatographic Alignment. Analytical chemistry 92 (17) (2020)
Alvaro Sebastian Vaca Jacome, Ryan Peckner, Nicholas Shulman, Karsten Krug, Katherine C DeRuff, Adam Officer, Karen E Christianson, Brendan MacLean, Michael J MacCoss, Steven A Carr, Jacob D Jaffe
Avant-garde: an automated data-driven DIA data curation tool. Nature methods 17 (12) (2020)
Lindsay K Pino, Brian C Searle, Han-Yin Yang, Andrew N Hoofnagle, William Stafford Noble, Michael J MacCoss
Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics. Journal of proteome research 19 (3) (2020)
Laura A Fleites, Richard Johnson, Angela R S Kruse, Ronald J Nachman, David G Hall, Michael J MacCoss, Michelle L Heck
Peptidomics Approaches for the Identification of Bioactive Molecules from Diaphorina citri. Journal of proteome research 19 (4) (2020)

Michael J MacCoss.css-eqlu8i{font-size:small;padding-left:4px;} (Michael MacCoss)

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Michael J MacCoss (Michael MacCoss)