Xun Lan

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 26

Top Topics

Transcription Factor

High Throughput Sequencing

Top Venues

Nature cell biology

Nature communications

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Jiacheng Hao, Chang Liu, Zhijie Gu, Xuanming Yang, Xun Lan, Xiaohuan Guo
Dysregulation of Wnt/β-catenin signaling contributes to intestinal inflammation through regulation of group 3 innate lymphoid cells. Nature communications 15 (1) (2024)
Qinhuan Luo, Yaozhu Chen, Xun Lan
COMSE: analysis of single-cell RNA-seq data using community detection-based feature selection. BMC biology 22 (1) (2024)
Zikun Yang, Xin Li, Lele Sheng, Ming Zhu, Xun Lan, Fei Gu
Multiomics-integrated deep language model enables in silico genome-wide detection of transcription factor binding site in unexplored biosamples. Bioinformatics (Oxford, England) 40 (1) (2024)
Ming Zhu, Runda Xu, Junsong Yuan, Jiacheng Wang, Xiaoyu Ren, Tingting Cong, Yaxian You, Anji Ju, Longchen Xu, Huimin Wang, Peiyuan Zheng, Huiying Tao, Chunhua Lin, Honghao Yu, Juanjuan Du, Xin Lin, Wei Xie, Yinqing Li, Xun Lan
Tracking-seq reveals the heterogeneity of off-target effects in CRISPR-Cas9-mediated genome editing. Nature biotechnology (2024)
Zikun Yang, Xin Li, Lele Sheng, Ming Zhu, Xun Lan, Fei Gu
Multiomics-integrated deep language model enables in silico genome-wide detection of transcription factor binding site in unexplored biosamples. Bioinformatics (Oxford, England) 40 (1) (2024)
Qinhuan Luo, Yaozhu Chen, Xun Lan
COMSE: analysis of single-cell RNA-seq data using community detection-based feature selection. BMC biology 22 (1) (2024)
Keyong Sun, Xin Liu, Runda Xu, Chang Liu, Anming Meng, Xun Lan
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq. Nature cell biology (2024)
Xuxiang Wang, Tengjiang Zhang, Bingxin Zheng, Youxue Lu, Yong Liang, Guoyuan Xu, Luyang Zhao, Yuwei Tao, Qianhui Song, Huiwen You, Haitian Hu, Xuan Li, Keyong Sun, Tianqi Li, Zian Zhang, Jianbian Wang, Xun Lan, Deng Pan, Yang-Xin Fu, Bin Yue, Hanqiu Zheng
Lymphotoxin-β promotes breast cancer bone metastasis colonization and osteolytic outgrowth. Nature cell biology (2024)
Keyong Sun, Xin Liu, Runda Xu, Chang Liu, Anming Meng, Xun Lan
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq. Nature cell biology 26 (7) (2024)
Keyong Sun, Xin Liu, Xun Lan
A single-cell atlas of chromatin accessibility in mouse organogenesis. Nature cell biology 26 (7) (2024)
Keyong Sun, Xin Liu, Xun Lan
A single-cell atlas of chromatin accessibility in mouse organogenesis. Nature cell biology 26 (7) (2024)
Keyong Sun, Xin Liu, Runda Xu, Chang Liu, Anming Meng, Xun Lan
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq. Nature cell biology 26 (7) (2024)
Xuxiang Wang, Tengjiang Zhang, Bingxin Zheng, Youxue Lu, Yong Liang, Guoyuan Xu, Luyang Zhao, Yuwei Tao, Qianhui Song, Huiwen You, Haitian Hu, Xuan Li, Keyong Sun, Tianqi Li, Zian Zhang, Jianbian Wang, Xun Lan, Deng Pan, Yang-Xin Fu, Bin Yue, Hanqiu Zheng
Lymphotoxin-β promotes breast cancer bone metastasis colonization and osteolytic outgrowth. Nature cell biology (2024)
Zilan Yu, Mengnan Jiang, Xun Lan
HeteroTCR: A heterogeneous graph neural network-based method for predicting peptide-TCR interaction. Communications biology 7 (1) (2024)
Keyong Sun, Xin Liu, Xun Lan
A single-cell atlas of chromatin accessibility in mouse organogenesis. Nature cell biology (2024)
Qinhuan Luo, Yaozhu Chen, Xun Lan
COMSE: analysis of single-cell RNA-seq data using community detection-based feature selection. BMC biology 22 (1) (2024)
Jiacheng Hao, Chang Liu, Zhijie Gu, Xuanming Yang, Xun Lan, Xiaohuan Guo
Dysregulation of Wnt/β-catenin signaling contributes to intestinal inflammation through regulation of group 3 innate lymphoid cells. Nature communications 15 (1) (2024)
Jiacheng Hao, Chang Liu, Zhijie Gu, Xuanming Yang, Xun Lan, Xiaohuan Guo
Dysregulation of Wnt/β-catenin signaling contributes to intestinal inflammation through regulation of group 3 innate lymphoid cells. Nature communications 15 (1) (2024)
Zilan Yu, Mengnan Jiang, Xun Lan
HeteroTCR: A heterogeneous graph neural network-based method for predicting peptide-TCR interaction. Communications biology 7 (1) (2024)
Yu Zheng, Haihui Jiang, Naixue Yang, Shaoping Shen, Daosheng Huang, Lemei Jia, Jing Ling, Longchen Xu, Mingxiao Li, Kefu Yu, Xiaohui Ren, Yong Cui, Xun Lan, Song Lin, Xin Lin
Glioma-derived ANXA1 suppresses the immune response to TLR3 ligands by promoting an anti-inflammatory tumor microenvironment. Cellular & molecular immunology (2023)
Keyong Sun, Runda Xu, Fuhai Ma, Naixue Yang, Yang Li, Xiaofeng Sun, Peng Jin, Wenzhe Kang, Lemei Jia, Jianping Xiong, Haitao Hu, Yantao Tian, Xun Lan
scRNA-seq of gastric tumor shows complex intercellular interaction with an alternative T cell exhaustion trajectory. Nature communications 13 (1) (2022)
Qinhuan Luo, Yongzhen Yu, Xun Lan
SIGNET: single-cell RNA-seq-based gene regulatory network prediction using multiple-layer perceptron bagging. Briefings in bioinformatics 23 (1) (2022)
Lihui Wang, Xun Lan
Rapid screening of TCR-pMHC interactions by the YAMTAD system. Cell discovery 8 (1) (2022)
Huanhuan Pang, Yisheng Jiang, Jie Li, Yushen Wang, Meng Nie, Nan Xiao, Shuo Wang, Zhihong Song, Fansen Ji, Yafei Chang, Yu Zheng, Ke Yao, LiAng Yao, Shao Li, Peng Li, Lei Song, Xun Lan, Zhiheng Xu, Ze-Ping Hu
Aberrant NAD+ metabolism underlies Zika virus-induced microcephaly. Nature metabolism 3 (8) (2021)
Naixue Yang, Fansen Ji, Liqing Cheng, Jingzhe Lu, Xiaofeng Sun, Xin Lin, Xun Lan
Knockout of immunotherapy prognostic marker genes eliminates the effect of the anti-PD-1 treatment. NPJ precision oncology 5 (1) (2021)
Longchen Xu, Haohang Zhang, Hengyi Xu, Han Yang, Lei Zhang, Wei Zhang, Fei Gu, Xun Lan
The coSIR model predicts effective strategies to limit the spread of SARS-CoV-2 variants with low severity and high transmissibility. Nonlinear dynamics (2021)