Yaron Orenstein

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 16

Top Topics

Circulating Tumor Cells

Top Venues

Nucleic acids research

Bioinformatics (Oxford, England)

Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- )

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Shai Elkayam, Ido Tziony, Yaron Orenstein
DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 on-target editing efficiency in specific cellular contexts. Bioinformatics (Oxford, England) 40 (8) (2024)
Shai Elkayam, Ido Tziony, Yaron Orenstein
DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 on-target editing efficiency in specific cellular contexts. Bioinformatics (Oxford, England) 40 (8) (2024)
Ofir Yaish, Yaron Orenstein
Generating, modeling and evaluating a large-scale set of CRISPR/Cas9 off-target sites with bulges. Nucleic acids research 52 (12) (2024)
Shai Elkayam, Ido Tziony, Yaron Orenstein
DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 on-target editing efficiency in specific cellular contexts. Bioinformatics (Oxford, England) 40 (8) (2024)
Ofir Yaish, Yaron Orenstein
Generating, modeling and evaluating a large-scale set of CRISPR/Cas9 off-target sites with bulges. Nucleic acids research (2024)
Ofir Yaish, Yaron Orenstein
Generating, modeling and evaluating a large-scale set of CRISPR/Cas9 off-target sites with bulges. Nucleic acids research 52 (12) (2024)
Ofir Yaish, Yaron Orenstein
Generating, modeling and evaluating a large-scale set of CRISPR/Cas9 off-target sites with bulges. Nucleic acids research 52 (12) (2024)
Karin Elimelech-Zohar, Yaron Orenstein
An overview on nucleic-acid G-quadruplex prediction: from rule-based methods to deep neural networks. Briefings in bioinformatics (2023)
Mira Barshai, Barak Engel, Idan Haim, Yaron Orenstein
G4mismatch: Deep neural networks to predict G-quadruplex propensity based on G4-seq data. PLoS computational biology 19 (3) (2023)
David Pellow, Lianrong Pu, Barış Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir, Yaron Orenstein
Efficient minimizer orders for large values of k using minimum decycling sets. Genome research (2023)
Maor Turner, Yehuda M Danino, Mira Barshai, Nancy S Yacovzada, Yahel Cohen, Tsviya Olender, Ron Rotkopf, David Monchaud, Eran Hornstein, Yaron Orenstein
rG4detector, a novel RNA G-quadruplex predictor, uncovers their impact on stress granule formation. Nucleic acids research 50 (20) (2022)
Shai Elkayam, Yaron Orenstein
DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 functional and endogenous on-target editing efficiency. Bioinformatics (Oxford, England) 38 (Suppl 1) (2022)
Sofia Aizenshtein-Gazit, Yaron Orenstein
DeepZF: improved DNA-binding prediction of C2H2-zinc-finger proteins by deep transfer learning. Bioinformatics (Oxford, England) 38 (Supplement_2) (2022)
Barış Ekim, Bonnie Berger, Yaron Orenstein
A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting Sets. Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) 12074 (2020)
Barış Ekim, Bonnie Berger, Yaron Orenstein
A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting Sets. Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) 12074 (2020)
Barış Ekim, Bonnie Berger, Yaron Orenstein
A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting Sets. Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) 12074 (2020)