Ron Shamir

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Venues

PLoS computational biology

Nucleic acids research

Bioinformatics (Oxford, England)

Molecular systems biology

Tel Aviv University

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Tel Aviv University

Israel

Professor :: Computer Science

Education History

University of California Berkeley

United States

PHD :: industrial engineering and operations research

Publications

Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Hagai Levi, Ran Elkon, Ron Shamir
The predictive capacity of polygenic risk scores for disease risk is only moderately influenced by imputation panels tailored to the target population. Bioinformatics (Oxford, England) 40 (2) (2024)
Lianrong Pu, Ron Shamir
4CAC: 4-class classifier of metagenome contigs using machine learning and assembly graphs. Nucleic acids research (2024)
Hagai Levi, Ran Elkon, Ron Shamir
The predictive capacity of polygenic risk scores for disease risk is only moderately influenced by imputation panels tailored to the target population. Bioinformatics (Oxford, England) 40 (2) (2024)
Hagai Levi, Ran Elkon, Ron Shamir
The predictive capacity of polygenic risk scores for disease risk is only moderately influenced by imputation panels tailored to the target population. Bioinformatics (Oxford, England) 40 (2) (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Hagai Levi, Ran Elkon, Ron Shamir
The predictive capacity of polygenic risk scores for disease risk is only moderately influenced by imputation panels tailored to the target population. Bioinformatics (Oxford, England) 40 (2) (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Yonatan Itai, Nimrod Rappoport, Ron Shamir
Integration of gene expression and DNA methylation data across different experiments. Nucleic acids research (2023)
David Pellow, Lianrong Pu, Barış Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir, Yaron Orenstein
Efficient minimizer orders for large values of k using minimum decycling sets. Genome research (2023)
Abhinav Dutta, David Pellow, Ron Shamir
Parameterized syncmer schemes improve long-read mapping. PLoS computational biology 18 (10) (2022)
Lianrong Pu, Ron Shamir
3CAC: improving the classification of phages and plasmids in metagenomic assemblies using assembly graphs. Bioinformatics (Oxford, England) 38 (Supplement_2) (2022)
Tom Aharon Hait, Ran Elkon, Ron Shamir
CT-FOCS: a novel method for inferring cell type-specific enhancer-promoter maps. Nucleic acids research 50 (10) (2022)
Hagai Levi, Ran Elkon, Ron Shamir
DOMINO: a network-based active module identification algorithm with reduced rate of false calls. Molecular systems biology 17 (1) (2021)
Dvir Netanely, Stav Leibou, Roma Parikh, Neta Stern, Hananya Vaknine, Ronen Brenner, Sarah Amar, Rivi Haiat Factor, Tomer Perluk, Jacob Frand, Eran Nizri, Dov Hershkovitz, Valentina Zemser-Werner, Carmit Levy, Ron Shamir
Classification of node-positive melanomas into prognostic subgroups using keratin, immune, and melanogenesis expression patterns. Oncogene 40 (10) (2021)
David Pellow, Alvah Zorea, Maraike Probst, Ori Furman, Arik Segal, Itzhak Mizrahi, Ron Shamir
SCAPP: an algorithm for improved plasmid assembly in metagenomes. Microbiome 9 (1) (2021)
Nimrod Rappoport, Roy Safra, Ron Shamir
MONET: Multi-omic module discovery by omic selection. PLoS computational biology 16 (9) (2020)
Nimrod Rappoport, Ron Shamir
Inaccuracy of the log-rank approximation in cancer data analysis. Molecular systems biology 15 (8) (2020)
Dvir Netanely, Neta Stern, Itay Laufer, Ron Shamir
PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets. BMC bioinformatics 20 (1) (2019)
Gal Dinstag, David Amar, Erik Ingelsson, Euan Ashley, Ron Shamir
Personalized prediction of adverse heart and kidney events using baseline and longitudinal data from SPRINT and ACCORD. PloS one 14 (8) (2019)
Christiana N Fogg, Diane E Kovats, Ron Shamir
2018 ISCB accomplishments by a senior scientist award. PLoS computational biology 14 (5) (2018)
Christiana N Fogg, Diane E Kovats, Ron Shamir
2018 ISCB Innovator Award recognizes M. Madan Babu. PLoS computational biology 14 (6) (2018)
Christiana N Fogg, Diane E Kovats, Ron Shamir
2018 outstanding contributions to ISCB award: Russ Altman. PLoS computational biology 14 (5) (2018)
Christiana N Fogg, Diane E Kovats, Ron Shamir
2018 ISCB Overton Prize awarded to Cole Trapnell. PLoS computational biology 14 (6) (2018)
Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford
Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing. PLoS computational biology 13 (10) (2017)
David Amar, Ron Shamir, Daniel Yekutieli
Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate. PLoS computational biology 13 (8) (2017)
Lin Yang, Yaron Orenstein, Arttu Jolma, Yimeng Yin, Jussi Taipale, Ron Shamir, Remo Rohs
Transcription factor family-specific DNA shape readout revealed by quantitative specificity models. Molecular systems biology 13 (2) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ron Shamir