Yi Zhao

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 24

Top Topics

Top Venues

Nature protocols

Nucleic acids research

Signal transduction and targeted therapy

This page only lists publications with an associated author ORCID identifier.

Publications

Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Senlin Lin, Fangyuan Zhao, Zihan Wu, Jianhua Yao, Yi Zhao, Zhiyuan Yuan
Streamlining spatial omics data analysis with Pysodb. Nature protocols (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Zhenyu Yang, Xiaoxi Zeng, Yi Zhao, Runsheng Chen
AlphaFold2 and its applications in the fields of biology and medicine. Signal transduction and targeted therapy 8 (1) (2023)
Lianhe Zhao, Xiaoning Qi, Yang Chen, Yixuan Qiao, Dechao Bu, Yang Wu, Yufan Luo, Sheng Wang, Rui Zhang, Yi Zhao
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network. Briefings in bioinformatics (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Senlin Lin, Fangyuan Zhao, Zihan Wu, Jianhua Yao, Yi Zhao, Zhiyuan Yuan
Streamlining spatial omics data analysis with Pysodb. Nature protocols 19 (3) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
Publisher Correction: SODB facilitates comprehensive exploration of spatial omics data. Nature methods (2023)
Yushang Yang, Yanguo Li, Haopeng Yu, Zhenyu Ding, Longqi Chen, Xiaoxi Zeng, Shunmin He, Qi Liao, Yi Zhao, Yong Yuan
Comprehensive landscape of resistance mechanisms for neoadjuvant therapy in esophageal squamous cell carcinoma by single-cell transcriptomics. Signal transduction and targeted therapy 8 (1) (2023)
Zhenyu Yang, Xiaoxi Zeng, Yi Zhao, Runsheng Chen
AlphaFold2 and its applications in the fields of biology and medicine. Signal transduction and targeted therapy 8 (1) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Lianhe Zhao, Xiaoning Qi, Yang Chen, Yixuan Qiao, Dechao Bu, Yang Wu, Yufan Luo, Sheng Wang, Rui Zhang, Yi Zhao
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network. Briefings in bioinformatics 24 (2) (2023)
Senlin Lin, Fangyuan Zhao, Zihan Wu, Jianhua Yao, Yi Zhao, Zhiyuan Yuan
Streamlining spatial omics data analysis with Pysodb. Nature protocols 19 (3) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods (2023)
Yu Zheng, Huaxia Luo, Xueyi Teng, Xinpei Hao, Xiaoyu Yan, Yiheng Tang, Wanyu Zhang, Yuanxin Wang, Peng Zhang, Yanyan Li, Yi Zhao, Runsheng Chen, Shunmin He
NPInter v5.0: ncRNA interaction database in a new era. Nucleic acids research (2022)
Yuwei Zhang, Dechao Bu, Peipei Huo, Zhihao Wang, Hao Rong, Yanguo Li, Jingjia Liu, Meng Ye, Yang Wu, Zheng Jiang, Qi Liao, Yi Zhao
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. Nucleic acids research 49 (W1) (2021)
Duancheng Guo, Yuan Wang, Yan Cheng, Shengyou Liao, Jian Hu, Fang Du, Gang Xu, Yong-Qiang Liu, Kathy Q Cai, Martin C H Cheung, Brandon J Wainwright, Qing Richard Lu, Yi Zhao, Zeng-Jie Yang
Tumor cells generate astrocyte-like cells that contribute to SHH-driven medulloblastoma relapse. The Journal of experimental medicine 218 (9) (2021)
Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Zhiye Ying, Haopeng Yu, Yanyan Li, Yi Zhao, Xiaoxi Zeng, Shunmin He, Runsheng Chen
piRBase: integrating piRNA annotation in all aspects. Nucleic acids research (2021)