Zhiyuan Yuan

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 25

Top Topics

Idiopathic Pulmonary Fibrosis

Electronic Health Record

Top Venues

Nature communications

Nature protocols

This page only lists publications with an associated author ORCID identifier.

Publications

Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods (2024)
Zhiyuan Yuan
MENDER: fast and scalable tissue structure identification in spatial omics data. Nature communications 15 (1) (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan
MENDER: fast and scalable tissue structure identification in spatial omics data. Nature communications 15 (1) (2024)
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, Yu Zhao, Jianhua Yao, Yan Cui, Xiao-Yong Zhang, Yi Zhao
Benchmarking spatial clustering methods with spatially resolved transcriptomics data. Nature methods 21 (4) (2024)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Senlin Lin, Fangyuan Zhao, Zihan Wu, Jianhua Yao, Yi Zhao, Zhiyuan Yuan
Streamlining spatial omics data analysis with Pysodb. Nature protocols (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Senlin Lin, Fangyuan Zhao, Zihan Wu, Jianhua Yao, Yi Zhao, Zhiyuan Yuan
Streamlining spatial omics data analysis with Pysodb. Nature protocols 19 (3) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
Publisher Correction: SODB facilitates comprehensive exploration of spatial omics data. Nature methods (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods 20 (3) (2023)
Senlin Lin, Fangyuan Zhao, Zihan Wu, Jianhua Yao, Yi Zhao, Zhiyuan Yuan
Streamlining spatial omics data analysis with Pysodb. Nature protocols 19 (3) (2023)
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, Fangyuan Zhao, Zhimeng Xu, Xiu Li, Yi Zhao, Michael Q Zhang, Jianhua Yao
SODB facilitates comprehensive exploration of spatial omics data. Nature methods (2023)
Zhiyuan Yuan, Yisi Li, Minglei Shi, Fan Yang, Juntao Gao, Jianhua Yao, Michael Q Zhang
SOTIP is a versatile method for microenvironment modeling with spatial omics data. Nature communications 13 (1) (2022)
Rongbo Shen, Lin Liu, Zihan Wu, Ying Zhang, Zhiyuan Yuan, Junfu Guo, Fan Yang, Chao Zhang, Bichao Chen, Wanwan Feng, Chao Liu, Jing Guo, Guozhen Fan, Yong Zhang, Yuxiang Li, Xue Liu, Jianhua Yao
Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding. Nature communications 13 (1) (2022)
Rongbo Shen, Lin Liu, Zihan Wu, Ying Zhang, Zhiyuan Yuan, Junfu Guo, Fan Yang, Chao Zhang, Bichao Chen, Wanwan Feng, Chao Liu, Jing Guo, Guozhen Fan, Yong Zhang, Yuxiang Li, Xue Liu, Jianhua Yao
Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding. Nature communications 13 (1) (2022)
Rongbo Shen, Lin Liu, Zihan Wu, Ying Zhang, Zhiyuan Yuan, Junfu Guo, Fan Yang, Chao Zhang, Bichao Chen, Wanwan Feng, Chao Liu, Jing Guo, Guozhen Fan, Yong Zhang, Yuxiang Li, Xue Liu, Jianhua Yao
Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding. Nature communications 13 (1) (2022)
Rongbo Shen, Lin Liu, Zihan Wu, Ying Zhang, Zhiyuan Yuan, Junfu Guo, Fan Yang, Chao Zhang, Bichao Chen, Wanwan Feng, Chao Liu, Jing Guo, Guozhen Fan, Yong Zhang, Yuxiang Li, Xue Liu, Jianhua Yao
Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding. Nature communications 13 (1) (2022)
Rongbo Shen, Lin Liu, Zihan Wu, Ying Zhang, Zhiyuan Yuan, Junfu Guo, Fan Yang, Chao Zhang, Bichao Chen, Wanwan Feng, Chao Liu, Jing Guo, Guozhen Fan, Yong Zhang, Yuxiang Li, Xue Liu, Jianhua Yao
Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding. Nature communications 13 (1) (2022)
Rongbo Shen, Lin Liu, Zihan Wu, Ying Zhang, Zhiyuan Yuan, Junfu Guo, Fan Yang, Chao Zhang, Bichao Chen, Wanwan Feng, Chao Liu, Jing Guo, Guozhen Fan, Yong Zhang, Yuxiang Li, Xue Liu, Jianhua Yao
Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding. Nature communications 13 (1) (2022)
Zhiyuan Yuan, Qiming Zhou, Lesi Cai, Lin Pan, Weiliang Sun, Shiwei Qumu, Si Yu, Jiaxin Feng, Hansen Zhao, Yong-Chang Zheng, Minglei Shi, Shao Li, Yang Chen, Xinrong Zhang, Michael Q Zhang
SEAM is a spatial single nuclear metabolomics method for dissecting tissue microenvironment. Nature methods 18 (10) (2021)