Yuxin Li

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 18

Top Topics

Bioinformatics Analysis

Histone Deacetylase

Top Venues

Nature communications

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Xinran Dong, Liang Ding, Andrew Thrasher, Xinge Wang, JingJing Liu, Qingfei Pan, Jordan Rash, Yogesh Dhungana, Xu Yang, Isabel Risch, Yuxin Li, Lei Yan, Michael C Rusch, Clay McLeod, Koon-Kiu Yan, Junmin Peng, Hongbo Chi, Jinghui Zhang, Jiyang Yu
NetBID2 provides comprehensive hidden driver analysis. Nature communications 14 (1) (2023)
Xinran Dong, Liang Ding, Andrew Thrasher, Xinge Wang, JingJing Liu, Qingfei Pan, Jordan Rash, Yogesh Dhungana, Xu Yang, Isabel Risch, Yuxin Li, Lei Yan, Michael C Rusch, Clay McLeod, Koon-Kiu Yan, Junmin Peng, Hongbo Chi, Jinghui Zhang, Jiyang Yu
NetBID2 provides comprehensive hidden driver analysis. Nature communications 14 (1) (2023)
Xinran Dong, Liang Ding, Andrew Thrasher, Xinge Wang, JingJing Liu, Qingfei Pan, Jordan Rash, Yogesh Dhungana, Xu Yang, Isabel Risch, Yuxin Li, Lei Yan, Michael C Rusch, Clay McLeod, Koon-Kiu Yan, Junmin Peng, Hongbo Chi, Jinghui Zhang, Jiyang Yu
NetBID2 provides comprehensive hidden driver analysis. Nature communications 14 (1) (2023)
John Lynch, Yao Wang, Yuxin Li, Kanisha Kavdia, Yu Fukuda, Sabina Ranjit, Camenzind G Robinson, Christy R R Grace, Youlin Xia, Junmin Peng, John D Schuetz
A PPIX-binding probe facilitates discovery of PPIX-induced cell death modulation by peroxiredoxin. Communications biology 6 (1) (2023)
Xinran Dong, Liang Ding, Andrew Thrasher, Xinge Wang, JingJing Liu, Qingfei Pan, Jordan Rash, Yogesh Dhungana, Xu Yang, Isabel Risch, Yuxin Li, Lei Yan, Michael C Rusch, Clay McLeod, Koon-Kiu Yan, Junmin Peng, Hongbo Chi, Jinghui Zhang, Jiyang Yu
NetBID2 provides comprehensive hidden driver analysis. Nature communications 14 (1) (2023)
Xinran Dong, Liang Ding, Andrew Thrasher, Xinge Wang, JingJing Liu, Qingfei Pan, Jordan Rash, Yogesh Dhungana, Xu Yang, Isabel Risch, Yuxin Li, Lei Yan, Michael C Rusch, Clay McLeod, Koon-Kiu Yan, Junmin Peng, Hongbo Chi, Jinghui Zhang, Jiyang Yu
NetBID2 provides comprehensive hidden driver analysis. Nature communications 14 (1) (2023)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer 4 (2) (2022)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer 4 (2) (2022)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer (2022)
Ling Li, Mingming Niu, Alyssa Erickson, Jie Luo, Kincaid Rowbotham, Kai Guo, He Huang, Yuxin Li, Yi Jiang, Junguk Hur, Chunyu Liu, Junmin Peng, Xusheng Wang
SMAP is a pipeline for sample matching in proteogenomics. Nature communications 13 (1) (2022)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer 4 (2) (2022)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer 4 (2) (2022)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer (2022)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer 4 (2) (2022)
Tizita Z Zeleke, Qingfei Pan, Codruta Chiuzan, Maika Onishi, Yuxin Li, Haiyan Tan, Mariano J Alvarez, Erin Honan, Min Yang, Pei Ling Chia, Partha Mukhopadhyay, Sean Kelly, Ruby Wu, Kathleen Fenn, Meghna S Trivedi, Melissa K Accordino, Katherine D Crew, Dawn L Hershman, Matthew Maurer, Simon Jones, Anthony High, Junmin Peng, Andrea Califano, Kevin M Kalinsky, Jiyang Yu, Jose Silva
Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer. Nature cancer 4 (2) (2022)
Hande Karahan, Daniel Curtis Smith, Byung-Wook Kim, Luke Child Dabin, Md Mamun Al-Amin, H R Sagara Wijeratne, Taylor Pennington, Gonzalo Viana di Prisco, Brianne McCord, Peter Bor-Chian Lin, Yuxin Li, Junmin Peng, Adrian L Oblak, Shaoyou Chu, Brady K Atwood, Jungsu Kim
Deletion of Abi3 gene locus exacerbates neuropathological features of Alzheimer's disease in a mouse model of Aβ amyloidosis. Science advances 7 (45) (2021)
Lingyun Long, Jun Wei, Seon Ah Lim, Jana L Raynor, Hao Shi, Jon Patrick Connelly, Hong Wang, Cliff Guy, Boer Xie, Nicole M Chapman, Guotong Fu, Yanyan Wang, Hongling Huang, Wei Su, Jordy Saravia, Isabel Risch, Yong-Dong Wang, Yuxin Li, Mingming Niu, Yogesh Dhungana, Anil Kc, Peipei Zhou, Peter Vogel, Jiyang Yu, Shondra M Pruett-Miller, Junmin Peng, Hongbo Chi
CRISPR screens unveil signal hubs for nutrient licensing of T cell immunity. Nature 600 (7888) (2021)
Hu Zeng, Mei Yu, Haiyan Tan, Yuxin Li, Wei Su, Hao Shi, Yogesh Dhungana, Clifford S Guy, Geoffrey A Neale, Caryn Cloer, Junmin Peng, Demin Wang, Hongbo Chi
Discrete roles and bifurcation of PTEN signaling and mTORC1-mediated anabolic metabolism underlie IL-7-driven B lymphopoiesis. Science advances 4 (1) (2018)