Zeynep Koşaloğlu-Yalçın (Zeynep Kosaloglu-Yalcin, Zeynep Kosaloglu)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 15

Top Topics

Machine Learning

Liver Metastases

High Throughput Sequencing

Top Venues

Nucleic acids research

Science translational medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Zhen Yan, Kevin Kim, Haeuk Kim, Brendan Ha, Anaïs Gambiez, Jason Bennett, Marcus Fabiano de Almeida Mendes, Raphael Trevizani, Jarjapu Mahita, Eve Richardson, Daniel Marrama, Nina Blazeska, Zeynep Koşaloğlu-Yalçın, Morten Nielsen, Alessandro Sette, Bjoern Peters, Jason A Greenbaum
Next-generation IEDB tools: a platform for epitope prediction and analysis. Nucleic acids research (2024)
Yat-Tsai Richie Wan, Zeynep Koşaloğlu-Yalçın, Bjoern Peters, Morten Nielsen
A large-scale study of peptide features defining immunogenicity of cancer neo-epitopes. NAR cancer 6 (1) (2024)
Aaron M Miller, Zeynep Koşaloğlu-Yalçın, Luise Westernberg, Leslie Montero, Milad Bahmanof, Angela Frentzen, Manasa Lanka, Ashmitaa Logandha Ramamoorthy Premlal, Grégory Seumois, Jason A Greenbaum, Spencer E Brightman, Karla Soria Zavala, Rukman R Thota, Martin S Naradikian, Samir S Makani, Scott M Lippman, Alessandro Sette, Ezra E W Cohen, Bjoern Peters, Stephen P Schoenberger
A functional identification platform reveals frequent, spontaneous neoantigen-specific T cell responses in patients with cancer. Science translational medicine 16 (736) (2024)
Aaron M Miller, Zeynep Koşaloğlu-Yalçın, Luise Westernberg, Leslie Montero, Milad Bahmanof, Angela Frentzen, Manasa Lanka, Ashmitaa Logandha Ramamoorthy Premlal, Grégory Seumois, Jason A Greenbaum, Spencer E Brightman, Karla Soria Zavala, Rukman R Thota, Martin S Naradikian, Samir S Makani, Scott M Lippman, Alessandro Sette, Ezra E W Cohen, Bjoern Peters, Stephen P Schoenberger
A functional identification platform reveals frequent, spontaneous neoantigen-specific T cell responses in patients with cancer. Science translational medicine 16 (736) (2024)
Yat-Tsai Richie Wan, Zeynep Koşaloğlu-Yalçın, Bjoern Peters, Morten Nielsen
A large-scale study of peptide features defining immunogenicity of cancer neo-epitopes. NAR cancer 6 (1) (2024)
Aaron M Miller, Zeynep Koşaloğlu-Yalçın, Luise Westernberg, Leslie Montero, Milad Bahmanof, Angela Frentzen, Manasa Lanka, Ashmitaa Logandha Ramamoorthy Premlal, Grégory Seumois, Jason A Greenbaum, Spencer E Brightman, Karla Soria Zavala, Rukman R Thota, Martin S Naradikian, Samir S Makani, Scott M Lippman, Alessandro Sette, Ezra E W Cohen, Bjoern Peters, Stephen P Schoenberger
A functional identification platform reveals frequent, spontaneous neoantigen-specific T cell responses in patients with cancer. Science translational medicine 16 (736) (2024)
Yat-Tsai Richie Wan, Zeynep Koşaloğlu-Yalçın, Bjoern Peters, Morten Nielsen
A large-scale study of peptide features defining immunogenicity of cancer neo-epitopes. NAR cancer 6 (1) (2024)
Zhen Yan, Kevin Kim, Haeuk Kim, Brendan Ha, Anaïs Gambiez, Jason Bennett, Marcus Fabiano de Almeida Mendes, Raphael Trevizani, Jarjapu Mahita, Eve Richardson, Daniel Marrama, Nina Blazeska, Zeynep Koşaloğlu-Yalçın, Morten Nielsen, Alessandro Sette, Bjoern Peters, Jason A Greenbaum
Next-generation IEDB tools: a platform for epitope prediction and analysis. Nucleic acids research 52 (W1) (2024)
Zhen Yan, Kevin Kim, Haeuk Kim, Brendan Ha, Anaïs Gambiez, Jason Bennett, Marcus Fabiano de Almeida Mendes, Raphael Trevizani, Jarjapu Mahita, Eve Richardson, Daniel Marrama, Nina Blazeska, Zeynep Koşaloğlu-Yalçın, Morten Nielsen, Alessandro Sette, Bjoern Peters, Jason A Greenbaum
Next-generation IEDB tools: a platform for epitope prediction and analysis. Nucleic acids research 52 (W1) (2024)
Zeynep Koşaloğlu-Yalçın, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters
The Cancer Epitope Database and Analysis Resource (CEDAR). Nucleic acids research (2022)
Ilanit Gutman, Ron Gutman, John Sidney, Leila Chihab, Michele Mishto, Juliane Liepe, Anthony Chiem, Jason A Greenbaum, Zhen Yan, Alessandro Sette, Zeynep Koşaloğlu-Yalçın, Bjoern Peters
Predicting the Success of Fmoc-Based Peptide Synthesis. ACS omega 7 (27) (2022)
Abraham Sachs, Eugene Moore, Zeynep Koşaloğlu-Yalçın, Bjoern Peters, John Sidney, Steven A Rosenberg, Paul F Robbins, Alessandro Sette
Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells. Journal of immunology (Baltimore, Md. : 1950) 205 (2) (2020)
Zeynep Koşaloğlu-Yalçın, John Sidney, William Chronister, Bjoern Peters, Alessandro Sette
Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5. Immunology 162 (2) (2020)
Meggy Suarez-Carmona, Pornpimol Chaorentong, Jakob Nikolas Kather, Rebecca Rothenheber, Azaz Ahmed, Anna Berthel, Anita Heinzelmann, Rodrigo Moraleda, Nektarios A Valous, Zeynep Koşaloğlu-Yalçın, Rosa Eurich, Jana Wolf, Silke Grauling-Halama, Michael Hundemer, Felix Lasitschka, Fee Klupp, Christoph Kahlert, Alexis Ulrich, Martin Schneider, Christine Falk, Dirk Jäger, Inka Zoernig, Niels Halama
CCR5 status and metastatic progression in colorectal cancer. Oncoimmunology 8 (9) (2019)
Zeynep Koşaloğlu-Yalçın, Manasa Lanka, Angela Frentzen, Ashmitaa Logandha Ramamoorthy Premlal, John Sidney, Kerrie Vaughan, Jason A Greenbaum, Paul Robbins, Jared J Gartner, Alessandro Sette, Bjoern Peters
Predicting T cell recognition of MHC class I restricted neoepitopes. Oncoimmunology 7 (11) (2018)