Combined Metabolomics with Transcriptomics Reveals Important Serum Biomarkers Correlated with Lung Cancer Proliferation through a Calcium Signaling Pathway.
Yuan ZhengZhuoru HeYu KongXinjie HuangWei ZhuZhongqiu LiuLingzhi GongPublished in: Journal of proteome research (2021)
Lung cancer (LC) is one of the most malignant cancers in the world, but currently, it lacks effective noninvasive biomarkers to assist its early diagnosis. Our study aims to discover potential serum diagnostic biomarkers for LC. In our study, untargeted serum metabolomics of a discovery cohort and targeted analysis of a test cohort were performed based on gas chromatography-mass spectrometry. Both univariate and multivariate statistical analyses were employed to screen for differential metabolites between LC and healthy control (HC), followed by the selection of candidate biomarkers through multiple algorithms. The results showed that 15 metabolites were significantly dysregulated between LC and HC, and a panel, comprising cholesterol, oleic acid, myo-inositol, 2-hydroxybutyric acid, and 4-hydroxybutyric acid, was demonstrated to have excellent differentiating capability for LC based on multiple classification modelings. In addition, the molecular interaction analysis combined with transcriptomics revealed a close correlation between the candidate biomarkers and LC proliferation via a Ca2+ signaling pathway. Our study discovered that cholesterol, oleic acid, myo-inositol, 2-hydroxybutyric acid, and 4-hydroxybutyric acid in combination could be a promising diagnostic biomarker for LC, and most importantly, our results will shed some light on the pathophysiological mechanism underlying LC to understand it deeply. The data that support the findings of this study are openly available in MetaboLights at https://www.ebi.ac.uk/metabolights/, reference number MTBLS1517.
Keyphrases
- signaling pathway
- mass spectrometry
- simultaneous determination
- liquid chromatography
- machine learning
- gas chromatography mass spectrometry
- magnetic resonance imaging
- single cell
- pi k akt
- high throughput
- solid phase extraction
- tandem mass spectrometry
- cell proliferation
- computed tomography
- magnetic resonance
- oxidative stress
- drug delivery
- cross sectional
- endoplasmic reticulum stress
- human health
- protein kinase
- gas chromatography
- high resolution mass spectrometry