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Efficient real-time selective genome sequencing on resource-constrained devices.

Po Jui ShihHassaan SaadatSri ParameswaranHasindu Gamaarachchi
Published in: GigaScience (2023)
HARU demonstrates that nanopore selective sequencing is possible on resource-constrained devices through rigorous hardware-software optimizations. The source code for the HARU sDTW module is available as open source at https://github.com/beebdev/HARU, and an example application that uses HARU is at https://github.com/beebdev/sigfish-haru.
Keyphrases
  • single cell
  • single molecule
  • gene expression
  • dna methylation
  • data analysis