Hasindu Gamaarachchi

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 16

Top Venues

GigaScience

Nature communications

Bioinformatics (Oxford, England)

BMC bioinformatics

Garvan Institute of Medical Research

University of New South Wales (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Garvan Institute of Medical Research Aug 03 2020

Australia

Genomics Computing Systems Engineer :: Kinghorn Centre for Clinical Genomics

UNSW Sydney

Australia

Casual Academic :: School of Computer Science and Engineering

University of Peradeniya Faculty of Engineering

Sri Lanka

Temporary Lecturer :: Department of Computer Engineering

Education History

University of New South Wales

Australia

PHD :: School of Computer Science and Engineering

University of Peradeniya Faculty of Engineering

Sri Lanka

BSC :: Department of Computer Engineering

Publications

Allegra Angeloni, Skye D Fissette, Deniz U Kaya, Jillian M Hammond, Hasindu Gamaarachchi, Ira W Deveson, Robert J Klose, Weiming Li, Xiaotian Zhang, Ozren Bogdanovic
Extensive DNA methylome rearrangement during early lamprey embryogenesis. Nature communications 15 (1) (2024)
Bonson Wong, James M Ferguson, Jessica Y Do, Hasindu Gamaarachchi, Ira W Deveson
Streamlining remote nanopore data access with slow5curl. GigaScience 13 (2024)
Hiruna Samarakoon, Kisaru Liyanage, James M Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W Deveson
Interactive visualization of nanopore sequencing signal data with Squigualiser. Bioinformatics (Oxford, England) 40 (8) (2024)
Bonson Wong, James M Ferguson, Jessica Y Do, Hasindu Gamaarachchi, Ira W Deveson
Streamlining remote nanopore data access with slow5curl. GigaScience 13 (2024)
Bonson Wong, James M Ferguson, Jessica Y Do, Hasindu Gamaarachchi, Ira W Deveson
Streamlining remote nanopore data access with slow5curl. GigaScience 13 (2024)
Hiruna Samarakoon, Kisaru Liyanage, James M Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W Deveson
Interactive visualization of nanopore sequencing signal data with Squigualiser. Bioinformatics (Oxford, England) 40 (8) (2024)
Allegra Angeloni, Skye D Fissette, Deniz U Kaya, Jillian M Hammond, Hasindu Gamaarachchi, Ira W Deveson, Robert J Klose, Weiming Li, Xiaotian Zhang, Ozren Bogdanovic
Extensive DNA methylome rearrangement during early lamprey embryogenesis. Nature communications 15 (1) (2024)
Allegra Angeloni, Skye D Fissette, Deniz U Kaya, Jillian M Hammond, Hasindu Gamaarachchi, Ira W Deveson, Robert J Klose, Weiming Li, Xiaotian Zhang, Ozren Bogdanovic
Extensive DNA methylome rearrangement during early lamprey embryogenesis. Nature communications 15 (1) (2024)
Po Jui Shih, Hassaan Saadat, Sri Parameswaran, Hasindu Gamaarachchi
Efficient real-time selective genome sequencing on resource-constrained devices. GigaScience 12 (2023)
Andre L M Reis, Melissa Rapadas, Jillian M Hammond, Hasindu Gamaarachchi, Igor Stevanovski, Meutia Ayuputeri Kumaheri, Sanjog R Chintalaphani, Duminda S B Dissanayake, Owen M Siggs, Alex W Hewitt, Bastien Llamas, Alex Brown, Gareth S Baynam, Graham J Mann, Brendan J McMorran, Simon Easteal, Azure Hermes, Misty R Jenkins, null null, Hardip R Patel, Ira W Deveson
The landscape of genomic structural variation in Indigenous Australians. Nature (2023)
Hasindu Gamaarachchi, Hiruna Samarakoon, Sasha P Jenner, James M Ferguson, Timothy G Amos, Jillian M Hammond, Hassaan Saadat, Martin A Smith, Sri Parameswaran, Ira W Deveson
Fast nanopore sequencing data analysis with SLOW5. Nature biotechnology 40 (7) (2022)
Igor Stevanovski, Sanjog R Chintalaphani, Hasindu Gamaarachchi, James M Ferguson, Sandy S Pineda, Carolin K Scriba, Michel C Tchan, Victor S C Fung, Karl Ng, Andrea Cortese, Henry Houlden, Carol Dobson-Stone, Lauren Fitzpatrick, Glenda M Halliday, Gianina Ravenscroft, Mark R Davis, Nigel G Laing, Avi Fellner, Marina L Kennerson, Kishore Raj Kumar, Ira W Deveson
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing. Science advances 8 (9) (2022)
Rowena A Bull, Thiruni N Adikari, James M Ferguson, Jillian M Hammond, Igor Stevanovski, Alicia G Beukers, Zin Naing, Malinna Yeang, Andrey Verich, Hasindu Gamaarachchi, Ki Wook Kim, Fabio Luciani, Sacha Stelzer-Braid, John-Sebastian Eden, William D Rawlinson, Sebastiaan J Van Hal, Ira W Deveson
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis. Nature communications 11 (1) (2020)
Hasindu Gamaarachchi, Chun Wai Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T Simpson, Martin A Smith, Sri Parameswaran
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis. BMC bioinformatics 21 (1) (2020)
Hiruna Samarakoon, Sanoj Punchihewa, Anjana Senanayake, Jillian M Hammond, Igor Stevanovski, James M Ferguson, Roshan Ragel, Hasindu Gamaarachchi, Ira W Deveson
Genopo: a nanopore sequencing analysis toolkit for portable Android devices. Communications biology 3 (1) (2020)
Hasindu Gamaarachchi, Sri Parameswaran, Martin A Smith
Featherweight long read alignment using partitioned reference indexes. Scientific reports 9 (1) (2019)

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Publication Activity (10 Years)

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Hasindu Gamaarachchi