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Human brain transcriptome analysis finds region- and subject-specific expression signatures of GABAAR subunits.

Adolfo SequeiraKevin ShenAssaf GottliebAgenor Limon
Published in: Communications biology (2019)
Altered expression of GABA receptors (GABAARs) has been implicated in neurological and psychiatric disorders, but limited information about region-specific GABAAR subunit expression in healthy human brains, heteromeric assembly of major isoforms, and their collective organization across healthy individuals, are major roadblocks to understanding their role in non-physiological states. Here, by using microarray and RNA-Seq datasets-from single cell nuclei to global brain expression-from the Allen Institute, we find that transcriptional expression of GABAAR subunits is anatomically organized according to their neurodevelopmental origin. The data show a combination of complementary and mutually-exclusive expression patterns that delineate major isoforms, and which is highly stereotypical across brains from control donors. We summarize the region-specific signature of GABAR subunits per subject and its variability in a control population sample that can be used as a reference for remodeling changes during homeostatic rearrangements of GABAAR subunits after physiological, pharmacological or pathological challenges.
Keyphrases
  • poor prognosis
  • rna seq
  • single cell
  • binding protein
  • gene expression
  • long non coding rna
  • healthcare
  • oxidative stress
  • transcription factor
  • machine learning
  • genome wide
  • blood brain barrier