Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features.
Van Thi Ngoc TramHoang Dang Khoa TaGangga AnuragaPhan Vu Thuy DungDo Thi Minh XuanSanskriti DeyChih-Yang WangYen-Nien LiuPublished in: International journal of molecular sciences (2023)
Prostate cancer (PCa) is one of the most prevalent cancers in men, yet its pathogenic pathways remain poorly understood. Transcriptomics and high-throughput sequencing can help uncover cancer diagnostic targets and understand biological circuits. Using prostate adenocarcinoma (PRAD) datasets of various web-based applications (GEPIA, UALCAN, cBioPortal, SR Plot, hTFtarget, Genome Browser, and MetaCore), we found that upregulated dysbindin domain-containing 1 ( DBNDD1 ) expression in primary prostate tumors was strongly correlated with pathways involving the cell cycle, mitotic in KEGG, WIKI, and REACTOME database, and transcription factor-binding sites with the DBNDD1 gene in prostate samples. DBNDD1 gene expression was influenced by sample type, cancer stage, and promoter methylation levels of different cancers, such as PRAD, liver hepatocellular carcinoma (LIHC), and lung adenocarcinoma (LUAD). Regulation of glycogen synthase kinase (GSK)-3β in bipolar disorder and ATP/ITP/GTP/XTP/TTP/CTP/UTP metabolic pathways was closely correlated with the DBNDD1 gene and its co-expressed genes in PCa. DBNDD1 gene expression was positively associated with immune infiltration of B cells, Myeloid-derived suppressor cell (MDSC), M2 macrophages, andneutrophil, whereas negatively correlated with CD8 + T cells, T follicular helper cells, M1 macrophages, and NK cells in PCa. These findings suggest that DBNDD1 may serve as a viable prognostic marker not only for early-stage PCa but also for immunotherapies.
Keyphrases
- prostate cancer
- gene expression
- cell cycle
- genome wide
- dna methylation
- radical prostatectomy
- transcription factor
- bipolar disorder
- papillary thyroid
- genome wide identification
- early stage
- single cell
- copy number
- nk cells
- cell proliferation
- high throughput sequencing
- squamous cell
- poor prognosis
- squamous cell carcinoma
- induced apoptosis
- lymph node metastasis
- rna seq
- stem cells
- major depressive disorder
- benign prostatic hyperplasia
- emergency department
- endoplasmic reticulum stress
- radiation therapy
- immune response
- oxidative stress
- dendritic cells
- bone marrow
- adverse drug
- young adults
- electronic health record
- locally advanced
- rectal cancer