Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.

Marc A Suchard Philippe LemeyGuy BaeleDaniel L AyresAlexei J DrummondAndrew Rambaut

Published in: Virus evolution (2018)

The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data. BEAST unifies molecular phylogenetic reconstruction with complex discrete and continuous trait evolution, divergence-time dating, and coalescent demographic models in an efficient statistical inference engine using Markov chain Monte Carlo integration. A convenient, cross-platform, graphical user interface allows the flexible construction of complex evolutionary analyses.

Keyphrases

genome wide
monte carlo
electronic health record
single cell
big data
data analysis
dna methylation
copy number
machine learning
deep learning
amino acid