Andrew Rambaut

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 66

Top Topics

Respiratory Syndrome Coronavirus

Helicobacter Pylori

Top Venues

Virus evolution

Nature microbiology

Nature medicine

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Yimin Li, Nena Bollen, Samuel Leandro Hong, Marius Brusselmans, Fabiana Gambaro, Marc A Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele
spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv : the preprint server for health sciences (2024)
Yimin Li, Nena Bollen, Samuel Leandro Hong, Marius Brusselmans, Fabiana Gambaro, Marc A Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele
spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv : the preprint server for health sciences (2024)
Francesco Parino, Emanuele Cristina Gustani-Buss, Trevor Felix Bedford, Marc A Suchard, Nídia Sequeira Trovão, Andrew Rambaut, Vittoria Colizza, Chiara Poletto, Philippe Lemey
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation. medRxiv : the preprint server for health sciences (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Lorenzo Subissi, James Richard Otieno, Nathalie Worp, Homa Attar Cohen, Bas Oude Munnink, Laith Jamal Abu-Raddad, Erik Alm, Amal Barakat, Wendy S Barclay, Jinal N Bhiman, Leon Caly, Meera Chand, Mark Chen, Ann Cullinane, Tulio de Oliveira, Christian Drosten, Julian Druce, Paul Effler, Ihab El Masry, Adama Faye, Elodie Ghedin, Rebecca Grant, Bart L Haagmans, Christian T Happi, Belinda L Herring, Emma B Hodcroft, Juniorcaius Ikejezie, Victoria Katawera, Zyleen Alnashir Kassamali, Yee Sin Leo, Gabriel M Leung, Rebecca J Kondor, Marco Marklewitz, Jairo Mendez-Rico, Nada M Melhem, Vincent J Munster, Karen Nahapetyan, Dhamari Naindoo, Djin-Ye Oh, Thomas P Peacock, Joseph S Malik Peiris, Zhibin Peng, Leo L M Poon, Andrew Rambaut, Senjuti Saha, Yinzhong Shen, Marilda M Siqueira, Erik M Volz, Sofonias K Tessema, Volker Thiel, Henda Triki, Sylvie van der Werf, Karin J von Eije, Jane Cunningham, Marion P G Koopmans, Anne von Gottberg, Anurag Agrawal, Maria D Van Kerkhove
An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution. Nature medicine (2024)
Emmanuel Hasivirwe Vakaniaki, Cris Kacita, Eddy Kinganda Lusamaki, Áine O'Toole, Tony Wawina-Bokalanga, Daniel Mukadi, Adrienne Amuri Aziza, Nadine Malyamungu-Bubala, Franklin Mweshi-Kumbana, Léandre Mutimbwa-Mambo, Freddy Belesi-Siangoli, Yves Mujula, Edyth Parker, Pauline-Chloé Muswamba-Kayembe, Sabin S Nundu, Robert S Lushima, Jean-Claude Makangara-Cigolo, Noella Mulopo-Mukanya, Elisabeth Pukuta-Simbu, Prince Akil-Bandali, Hugo Kavunga, Ombotimbe Abdramane, Isabel Brosius, Eugene Bangwen, Koen O A Vercauteren, Nadia Adjoa Sam-Agudu, Edward J Mills, Olivier Tshiani-Mbaya, Nicole A Hoff, Anne W Rimoin, Lisa E Hensley, Jason Kindrachuk, Cheryl Baxter, Tulio de Oliveira, Ahidjo Ayouba, Martine Peeters, Eric Delaporte, Steve Ahuka-Mundeke, Emma L Mohr, Nancy J Sullivan, Jean-Jacques Muyembe-Tamfum, Jean B Nachega, Andrew Rambaut, Laurens Liesenborghs, Placide Mbala-Kingebeni
Sustained Human Outbreak of a New MPXV Clade I Lineage in the Eastern Democratic Republic of the Congo. Nature medicine (2024)
Áine Niamh O'Toole, Rachel Colquhoun, Corey Ansley, Catherine Troman, Daniel Maloney, Zoe Vance, Joyce Akello, Erika Bujaki, Manasi Majumdar, Adnan Khurshid, Yasir Arshad, Muhammad Masroor Alam, Javier Martin, Alexander G Shaw, Nicholas C Grassly, Andrew Rambaut
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha. Virus evolution 10 (1) (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Emmanuel Hasivirwe Vakaniaki, Cris Kacita, Eddy Kinganda Lusamaki, Áine O'Toole, Tony Wawina-Bokalanga, Daniel Mukadi, Adrienne Amuri Aziza, Nadine Malyamungu-Bubala, Franklin Mweshi-Kumbana, Léandre Mutimbwa-Mambo, Freddy Belesi-Siangoli, Yves Mujula, Edyth Parker, Pauline-Chloé Muswamba-Kayembe, Sabin S Nundu, Robert S Lushima, Jean-Claude Makangara-Cigolo, Noella Mulopo-Mukanya, Elisabeth Pukuta-Simbu, Prince Akil-Bandali, Hugo Kavunga, Ombotimbe Abdramane, Isabel Brosius, Eugene Bangwen, Koen O A Vercauteren, Nadia Adjoa Sam-Agudu, Edward J Mills, Olivier Tshiani-Mbaya, Nicole A Hoff, Anne W Rimoin, Lisa E Hensley, Jason Kindrachuk, Cheryl Baxter, Tulio de Oliveira, Ahidjo Ayouba, Martine Peeters, Eric Delaporte, Steve Ahuka-Mundeke, Emma L Mohr, Nancy J Sullivan, Jean-Jacques Muyembe-Tamfum, Jean B Nachega, Andrew Rambaut, Laurens Liesenborghs, Placide Mbala-Kingebeni
Sustained human outbreak of a new MPXV clade I lineage in eastern Democratic Republic of the Congo. Nature medicine (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology (2024)
Francesco Parino, Emanuele Cristina Gustani-Buss, Trevor Felix Bedford, Marc A Suchard, Nídia Sequeira Trovão, Andrew Rambaut, Vittoria Colizza, Chiara Poletto, Philippe Lemey
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation. medRxiv : the preprint server for health sciences (2024)
Áine Niamh O'Toole, Rachel Colquhoun, Corey Ansley, Catherine Troman, Daniel Maloney, Zoe Vance, Joyce Akello, Erika Bujaki, Manasi Majumdar, Adnan Khurshid, Yasir Arshad, Muhammad Masroor Alam, Javier Martin, Alexander G Shaw, Nicholas C Grassly, Andrew Rambaut
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha. Virus evolution 10 (1) (2024)
Lorenzo Subissi, James Richard Otieno, Nathalie Worp, Homa Attar Cohen, Bas Oude Munnink, Laith Jamal Abu-Raddad, Erik Alm, Amal Barakat, Wendy S Barclay, Jinal N Bhiman, Leon Caly, Meera Chand, Mark Chen, Ann Cullinane, Tulio de Oliveira, Christian Drosten, Julian Druce, Paul Effler, Ihab El Masry, Adama Faye, Elodie Ghedin, Rebecca Grant, Bart L Haagmans, Christian T Happi, Belinda L Herring, Emma B Hodcroft, Juniorcaius Ikejezie, Victoria Katawera, Zyleen Alnashir Kassamali, Yee Sin Leo, Gabriel M Leung, Rebecca J Kondor, Marco Marklewitz, Jairo Mendez-Rico, Nada M Melhem, Vincent J Munster, Karen Nahapetyan, Dhamari Naindoo, Djin-Ye Oh, Thomas P Peacock, Joseph S Malik Peiris, Zhibin Peng, Leo L M Poon, Andrew Rambaut, Senjuti Saha, Yinzhong Shen, Marilda M Siqueira, Erik M Volz, Sofonias K Tessema, Volker Thiel, Henda Triki, Sylvie van der Werf, Karin J von Eije, Jane Cunningham, Marion P G Koopmans, Anne von Gottberg, Anurag Agrawal, Maria D Van Kerkhove
An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution. Nature medicine (2024)
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T Wolfinger, Angie S Hinrichs, Áine Niamh O'Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell B Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data. Nature microbiology 9 (2) (2024)
Sebastian Duchene, Andrew Rambaut, Sebastián Duchêne, Wytamma Wirth
Clockor2: Inferring global and local strict molecular clocks using root-to-tip regression. Systematic biology (2024)
Yimin Li, Nena Bollen, Samuel Leandro Hong, Marius Brusselmans, Fabiana Gambaro, Marc A Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele
spread.gl: visualising pathogen dispersal in a high-performance browser application. medRxiv : the preprint server for health sciences (2024)
Joseph L-H Tsui, John T McCrone, Ben C Lambert, Sumali Bajaj, Rhys P D Inward, Paolo Bosetti, Rosario Evans Pena, Houriiyah Tegally, Verity Hill, Alexander Eugene Zarebski, Thomas P Peacock, Luyang Liu, Neo Wu, Megan Davis, Issac I Bogoch, Kamran Khan, Meaghan Kall, Nurin Iwani Binti Abdul Aziz, Rachel Colquhoun, Áine Niamh O'Toole, Benjamin C Jackson, Abhishek Dasgupta, Eduan Wilkinson, Tulio de Oliveira, null null, Thomas Richard Connor, Nicholas James Loman, Vittoria Colizza, Christophe Fraser, Erik M Volz, Xiang Ji, Bernardo Gutierrez, Meera Chand, Simon Dellicour, Simon Cauchemez, Jayna Ragwani, Marc A Suchard, Philippe Lemey, Andrew Rambaut, Oliver George Pybus, Moritz U G Kraemer
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1. Science (New York, N.Y.) 381 (6655) (2023)
Alexis Robert, Joseph Tsui Lok Hei, Conall H Watson, Pierre-Stéphane Gsell, Yper Hall, Andrew Rambaut, Ira M Longini, Keïta Sakoba, Adam J Kucharski, Alhassane Touré, Sévérine Danmadji Nadlaou, Mamadou Saidou Barry, Thierno Oumar Fofana, Ibrahima Lansana Kaba, Lansana Sylla, Mohamed Lamine Diaby, Ousmane Soumah, Abdourahime Diallo, Amadou Niare, Abdourahamane Diallo, Rosalind M Eggo, Miles W Caroll, Ana Maria Henao-Restrepo, W John Edmunds, Stéphane Hué
Quantifying the value of viral genomics when inferring who infected whom in the 2014-16 Ebola virus outbreak in Guinea. Virus evolution 9 (1) (2023)
Alexander Crits-Christoph, Joshua I Levy, Jonathan E Pekar, Stephen A Goldstein, Reema Singh, Zach Hensel, Karthik Gangavarapu, Matthew B Rogers, Niema Moshiri, Robert F Garry, Edward C Holmes, Marion P G Koopmans, Philippe Lemey, Saskia V Popescu, Andrew Rambaut, David L Robertson, Marc A Suchard, Joel O Wertheim, Angela L Rasmussen, Kristian G Andersen, Michael Worobey, Florence Débarre
Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic. bioRxiv : the preprint server for biology (2023)
Nnaemeka Ndodo, Jonathan Ashcroft, Kuiama Lewandowski, Adesola Yinka-Ogunleye, Chimaobi Chukwu, Adama Ahmad, David J King, Afolabi Akinpelu, Carlos Maluquer de Motes, Paolo Ribeca, Rebecca P Sumner, Andrew Rambaut, Michael Chester, Thomas Maishman, Oluwafemi Bamidele, Nwando Mba, Olajumoke Babatunde, Olusola Aruna, Steven T Pullan, Benedict Gannon, Colin Stewart Brown, Chikwe Ihekweazu, Ifedayo M O Adetifa, David O Ulaeto
Distinct monkeypox virus lineages co-circulating in humans before 2022. Nature medicine (2023)
Cornelius Römer, Daniel J Sheward, Ryan Hisner, Federico Gueli, Hitoshi Sakaguchi, Nicholas Frohberg, Josette Schoenmakers, Kenta Sato, Áine Niamh O'Toole, Andrew Rambaut, Oliver G Pybus, Christopher Ruis, Ben Murrell, Thomas P Peacock
SARS-CoV-2 evolution in the Omicron era. Nature microbiology (2023)
Alexander G Shaw, Tresor Kabeya Mampuela, Emmanuel Lokilo Lofiko, Catherine B Pratt, Catherine Troman, Erika Bujaki, Áine Niamh O'Toole, Joyce Odeke Akello, Adrienne Amuri Aziza, Eddy Kinganda Lusamaki, Jean-Claude Makangara Cigolo, Marceline Akonga, Yvonne Lay, Bibiche Nsunda, Bailey White, David Jorgensen, Elizabeth Pukuta, Yogolelo Riziki, Kathleen E Rankin, Andrew Rambaut, Steve Ahuka-Mundeke, Jean-Jacques Muyembe, Javier Martin, Nicholas C Grassly, Placide Mbala-Kingebeni
Sensitive poliovirus detection using nested PCR and nanopore sequencing: a prospective validation study. Nature microbiology (2023)
Alexis Robert, Joseph Tsui Lok Hei, Conall H Watson, Pierre-Stéphane Gsell, Yper Hall, Andrew Rambaut, Ira M Longini, Keïta Sakoba, Adam J Kucharski, Alhassane Touré, Sévérine Danmadji Nadlaou, Mamadou Saidou Barry, Thierno Oumar Fofana, Ibrahima Lansana Kaba, Lansana Sylla, Mohamed Lamine Diaby, Ousmane Soumah, Abdourahime Diallo, Amadou Niare, Abdourahamane Diallo, Rosalind M Eggo, Miles W Caroll, Ana Maria Henao-Restrepo, W John Edmunds, Stéphane Hué
Quantifying the value of viral genomics when inferring who infected whom in the 2014-16 Ebola virus outbreak in Guinea. Virus evolution 9 (1) (2023)
Áine Niamh O'Toole, Richard A Neher, Nnaemeka Ndodo, Vítor Borges, Ben Gannon, João Paulo Gomes, Natalie Groves, David J King, Daniel Maloney, Philippe Lemey, Kuiama Lewandowski, Nicholas James Loman, Richard Myers, Ifeanyi F Omah, Marc A Suchard, Michael Worobey, Meera Chand, Chikwe Ihekweazu, David Ulaeto, Ifedayo M O Adetifa, Andrew Rambaut
APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016. Science (New York, N.Y.) 382 (6670) (2023)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Derek W Wright, William T Harvey, Joseph Hughes, MacGregor Cox, Thomas P Peacock, Rachel Colquhoun, Benjamin C Jackson, Richard J Orton, Morten Nielsen, Nienyun Sharon Hsu, null null, Ewan M Harrison, Thushan I de Silva, Andrew Rambaut, Sharon J Peacock, David L Robertson, Alessandro M Carabelli
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer. Virus evolution 8 (1) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Michael Worobey, Joshua I Levy, Lorena Mariana Malpica Serrano, Alexander Crits-Christoph, Jonathan E Pekar, Stephen A Goldstein, Angela L Rasmussen, Moritz U G Kraemer, Chris Newman, Marion P G Koopmans, Marc A Suchard, Joel O Wertheim, Philippe Lemey, David L Robertson, Robert F Garry, Edward C Holmes, Andrew Rambaut, Kristian G Andersen
The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic. Science (New York, N.Y.) 377 (6609) (2022)
Lorenzo Subissi, Anne von Gottberg, Lipi Thukral, Nathalie Worp, Bas Oude Munnink, Surabhi Rathore, Laith Jamal Abu-Raddad, Ximena Aguilera, Erik Alm, Brett Nicholas Archer, Homa Attar Cohen, Amal Barakat, Wendy S Barclay, Jinal N Bhiman, Leon Caly, Meera Chand, Mark Chen, Ann Cullinane, Tulio de Oliveira, Christian Drosten, Julian Druce, Paul Effler, Ihab El Masry, Adama Faye, Simani Gaseitsiwe, Elodie Ghedin, Rebecca Grant, Bart L Haagmans, Belinda L Herring, Shilpa S Iyer, Zyleen Alnashir Kassamali, Manish Kakkar, Rebecca J Kondor, Juliana Almeida Leite, Yee Sin Leo, Gabriel M Leung, Marco Marklewitz, Sikhulile Moyo, Jairo Mendez-Rico, Nada M Melhem, Vincent J Munster, Karen Nahapetyan, Djin-Ye Oh, Boris I Pavlin, Thomas P Peacock, Joseph S Malik Peiris, Zhibin Peng, Leo L M Poon, Andrew Rambaut, Jilian Sacks, Yinzhong Shen, Marilda M Siqueira, Sofonias K Tessema, Erik M Volz, Volker Thiel, Sylvie van der Werf, Sylvie Briand, Mark D Perkins, Maria D Van Kerkhove, Marion P G Koopmans, Anurag Agrawal
An early warning system for emerging SARS-CoV-2 variants. Nature medicine 28 (6) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Raquel Viana, Sikhulile Moyo, Daniel Gyamfi Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L Althaus, Ugochukwu J Anyaneji, Phillip A Bester, Maciej F Boni, Mohammed Chand, Wonderful T Choga, Rachel Colquhoun, Michaela Davids, Koen Deforche, Deelan Doolabh, Louis du Plessis, Susan Engelbrecht, Josie Everatt, Jennifer Giandhari, Marta Giovanetti, Diana Hardie, Verity Hill, Nei-Yuan Hsiao, Arash Iranzadeh, Arshad Ismail, Charity Joseph, Rageema Joseph, Legodile Koopile, Sergei L Kosakovsky Pond, Moritz U G Kraemer, Lesego Kuate-Lere, Oluwakemi Laguda-Akingba, Onalethatha Lesetedi-Mafoko, Richard J Lessells, Shahin Lockman, Alexander G Lucaci, Arisha Maharaj, Boitshoko Mahlangu, Tongai Maponga, Kamela Mahlakwane, Zinhle Makatini, Gert Marais, Dorcas Maruapula, Kereng Masupu, Mogomotsi Matshaba, Simnikiwe Mayaphi, Nokuzola Mbhele, Mpaphi B Mbulawa, Adriano Mendes, Koleka Mlisana, Anele Mnguni, Thabo Mohale, Monika Moir, Kgomotso Moruisi, Mosepele Mosepele, Gerald Motsatsi, Modisa S Motswaledi, Thongbotho Mphoyakgosi, Nokukhanya Msomi, Peter N Mwangi, Yeshnee Naidoo, Noxolo Ntuli, Martin Nyaga, Lucier Olubayo, Sureshnee Pillay, Botshelo Radibe, Yajna Ramphal, Upasana Ramphal, James E San, Lesley Scott, Roger Shapiro, Lavanya Singh, Pamela Smith-Lawrence, Wendy Stevens, Amy Strydom, Kathleen Subramoney, Naume Tebeila, Derek Tshiabuila, Joseph Tsui, Stephanie van Wyk, Steven Weaver, Constantinos K Wibmer, Eduan Wilkinson, Nicole Wolter, Alexander E Zarebski, Boitumelo Zuze, Dominique Goedhals, Wolfgang Preiser, Florette Treurnicht, Marietje Venter, Carolyn Williamson, Oliver George Pybus, Jinal N Bhiman, Allison Glass, Darren P Martin, Andrew Rambaut, Simani Gaseitsiwe, Anne von Gottberg, Tulio de Oliveira
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa. Nature 603 (7902) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
John T McCrone, Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben C Lambert, Rhys P D Inward, Samir Bhatt, Erik M Volz, Christopher Ruis, Simon Dellicour, Guy Baele, Alexander E Zarebski, Adam Sadilek, Neo Wu, Aaron Schneider, Xiang Ji, Jayna Raghwani, Benjamin C Jackson, Rachel Colquhoun, Áine O'Toole, Thomas P Peacock, Kate Twohig, Simon Thelwall, Gavin Dabrera, Richard Myers, null null, Nuno Rodrigues Faria, Carmen Huber, Isaac I Bogoch, Kamran Khan, Louis du Plessis, Jeffrey C Barrett, David M Aanensen, Wendy S Barclay, Meera Chand, Thomas Richard Connor, Nicholas J Loman, Marc A Suchard, Oliver George Pybus, Andrew Rambaut, Moritz U G Kraemer
Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature 610 (7930) (2022)
Houriiyah Tegally, Monika Moir, Josie Everatt, Marta Giovanetti, Cathrine Scheepers, Eduan Wilkinson, Kathleen Subramoney, Zinhle Makatini, Sikhulile Moyo, Daniel Gyamfi Amoako, Cheryl Baxter, Christian L Althaus, Ugochukwu J Anyaneji, Dikeledi Kekana, Raquel Viana, Jennifer Giandhari, Richard J Lessells, Tongai Gibson Maponga, Dorcas Maruapula, Wonderful Choga, Mogomotsi Matshaba, Mpaphi B Mbulawa, Nokukhanya Msomi, null null, Yeshnee Naidoo, Sureshnee Pillay, Tomasz Janusz Sanko, James Emmanuel San, Lesley Scott, Lavanya Singh, Nonkululeko A Magini, Pamela Smith-Lawrence, Wendy Stevens, Graeme Dor, Derek Tshiabuila, Nicole Wolter, Wolfgang Preiser, Florette K Treurnicht, Marietjie Venter, Georginah Chiloane, Caitlyn McIntyre, Áine Niamh O'Toole, Christopher Ruis, Thomas P Peacock, Cornelius Römer, Sergei L Kosakovsky Pond, Carolyn Williamson, Oliver George Pybus, Jinal N Bhiman, Allison J Glass, Darren P Martin, Ben Jackson, Andrew Rambaut, Oluwakemi Laguda-Akingba, Simani Gaseitsiwe, Anne von Gottberg, Tulio de Oliveira
Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa. Nature medicine 28 (9) (2022)
Jonathan E Pekar, Andrew F Magee, Edyth Parker, Niema Moshiri, Katherine Izhikevich, Jennifer L Havens, Karthik Gangavarapu, Lorena Mariana Malpica Serrano, Alexander Crits-Christoph, Nathaniel L Matteson, Mark Zeller, Joshua I Levy, Jade C Wang, Scott Hughes, Jungmin Lee, Heedo Park, Man-Seong Park, Katherine Ching Zi Yan, Raymond Tzer Pin Lin, Mohd Noor Mat Isa, Yusuf Muhammad Noor, Tetyana I Vasylyeva, Robert F Garry, Edward C Holmes, Andrew Rambaut, Marc A Suchard, Kristian G Andersen, Michael Worobey, Joel O Wertheim
The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2. Science (New York, N.Y.) 377 (6609) (2022)
Kanika D Nahata, Filip Bielejec, Juan Monetta, Simon Dellicour, Andrew Rambaut, Marc A Suchard, Guy Baele, Philippe Lemey
SPREAD 4: online visualisation of pathogen phylogeographic reconstructions. Virus evolution 8 (2) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
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