Integrated Mechanisms of Polarity-Based Extracts of Cucumis melo L. Seed Kernels for Airway Smooth Muscle Relaxation via Key Signaling Pathways Based on WGCNA, In Vivo, and In Vitro Analyses.
Muqeet WahidFatima SaqibAnam AliAbdulrahman AlshammariMetab AlharbiAbdur RaufMohammad S MubarakPublished in: Pharmaceuticals (Basel, Switzerland) (2022)
The present study aimed to determine the mechanisms responsible for calcium-mediated smooth muscle contractions in C. melo seeds. The phytochemicals of C. melo were identified and quantified with the aid of Liquid Chromatography Electrospray Ionization Tandem Mass Spectrometric (LC/ESI-MS/MS) and high-performance liquid chromatography (HPLC), and then tested in-vitro and in vivo to confirm involvement in smooth muscle relaxation. Allergic asthma gene datasets were acquired from the NCBI gene expression omnibus (GEO) and differentially expressed gene (DEG) analysis, weighted gene co-expression network analysis (WGCNA), and functional enrichment analysis were conducted. Additionally, molecular docking of key genes was carried out. Kaempferol, rutin, and quercetin are identified as phytochemical constituents of C. melo seeds. Results indicated that C. melo seeds exhibit a dose-dependent relaxant effect for potassium chloride (80 mM)- induced spastic contraction and calcium antagonistic response in calcium dose-response curves. The functional enrichment of WGCNA and DEG asthma-associated pathogenic genes showed cytokine-mediated pathways and inflammatory responses. Furthermore, CACNA1A, IL2RB, and NOS2 were identified as key genes with greater binding affinity with rutin, quercitrin, and kaempferol in molecular docking. These results show that the bronchodilator and antidiarrheal effects of C. melo were produced by altering the regulatory genes of calcium-mediated smooth muscle contraction.
Keyphrases
- smooth muscle
- molecular docking
- genome wide identification
- genome wide
- ms ms
- high performance liquid chromatography
- simultaneous determination
- tandem mass spectrometry
- network analysis
- transcription factor
- liquid chromatography
- mass spectrometry
- dna methylation
- gene expression
- bioinformatics analysis
- genome wide analysis
- solid phase extraction
- molecular dynamics simulations
- copy number
- ultra high performance liquid chromatography
- chronic obstructive pulmonary disease
- liquid chromatography tandem mass spectrometry
- poor prognosis
- lung function
- signaling pathway
- allergic rhinitis
- high resolution mass spectrometry
- high resolution
- cell proliferation
- magnetic resonance
- single molecule
- magnetic resonance imaging
- epithelial mesenchymal transition
- nitric oxide synthase
- cerebral palsy
- single cell
- capillary electrophoresis
- dna binding
- computed tomography
- oxidative stress
- endoplasmic reticulum stress
- rna seq
- pi k akt