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VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.

Andrew N HoldingFederico M GiorgiAmanda DonnellyAmy E CullenSankari NagarajanLuke A SelthFlorian Markowetz
Published in: Genome biology (2019)
Our findings provide new insight into the role of GRHL2 in regulating eRNA transcription as part of estrogen receptor signaling. These results demonstrate VULCAN, available from Bioconductor, as a powerful predictive tool.
Keyphrases
  • transcription factor
  • poor prognosis
  • single cell
  • genome wide
  • rna seq
  • high throughput
  • circulating tumor cells
  • estrogen receptor
  • gene expression
  • dna methylation