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Text-mining clinically relevant cancer biomarkers for curation into the CIViC database.

Jake LeverMartin R JonesArpad M DanosKilannin KrysiakMelika BonakdarJasleen K GrewalLuka CulibrkObi L GriffithMalachi GriffithSteven J M Jones
Published in: Genome medicine (2019)
Through integration with CIVIC, we provide a prioritized list of curatable clinically relevant cancer biomarkers as well as a resource that is valuable to other knowledgebases and precision cancer analysts in general. All data is publically available and distributed with a Creative Commons Zero license. The CIViCmine knowledgebase is available at http://bionlp.bcgsc.ca/civicmine/.
Keyphrases
  • papillary thyroid
  • squamous cell
  • lymph node metastasis
  • squamous cell carcinoma
  • emergency department
  • childhood cancer
  • young adults
  • electronic health record
  • smoking cessation
  • data analysis